Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7320

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15688 and 15689 are separated by 410 nucleotides mRNA_7320: 15688 - BLAST genomic scaffold, msy-sf-7 protein, putative [Rhizoct..., at 106 to 1,532 15688 mRNA_7321: 15689 - KOG1339 Aspartyl protease, at 1,943 to 3,763 15689

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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14 + -0.0
14 + +0.9
14 + +0.5
14 + +1.1
22 + -0.8
29 + -1.0
35 + +0.1
45 + +0.6
66 + -0.3
68 + -2.2
71 - -1.2
105 + +0.0
120 - +1.3
120 + -0.6
121 - -0.3
122 - -2.6
126 + +0.2
126 + +0.2
131 - +0.8
135 - -1.3
135 + +0.1
135 + -0.2
135 + -1.4
135 - -1.6
142 - +0.8
148 + -1.7
153 + +0.4
159 - +0.7
159 - -0.1
161 + -1.2
168 - -1.0
195 + +1.3
233 + -0.1
263 + 15688 mRNA_7320 0.11 +1.5
267 - 15688 mRNA_7320 0.11 -0.8
301 - 15688 mRNA_7320 0.14 +0.5
310 - 15688 mRNA_7320 0.14 +0.6
313 + 15688 mRNA_7320 0.15 +1.9
313 + 15688 mRNA_7320 0.15 -0.8
319 + 15688 mRNA_7320 0.15 +0.7
322 - 15688 mRNA_7320 0.15 -0.0
340 - 15688 mRNA_7320 0.16 +0.2
345 + 15688 mRNA_7320 0.17 +0.0
357 + 15688 mRNA_7320 0.18 +2.5
359 + 15688 mRNA_7320 0.18 +1.2
365 - 15688 mRNA_7320 0.18 -1.1
401 - 15688 mRNA_7320 0.21 -0.8
401 - 15688 mRNA_7320 0.21 +0.3
401 + 15688 mRNA_7320 0.21 +0.7
405 + 15688 mRNA_7320 0.21 -1.5
415 + 15688 mRNA_7320 0.22 +0.1
428 - 15688 mRNA_7320 0.23 -0.1
461 - 15688 mRNA_7320 0.25 -0.5
462 + 15688 mRNA_7320 0.25 -0.6
466 - 15688 mRNA_7320 0.25 -0.0
482 + 15688 mRNA_7320 0.26 +1.3
488 - 15688 mRNA_7320 0.27 -0.7
573 - 15688 mRNA_7320 0.33 +0.2
594 - 15688 mRNA_7320 0.34 +0.8
595 + 15688 mRNA_7320 0.34 -0.4
595 + 15688 mRNA_7320 0.34 +0.1
625 - 15688 mRNA_7320 0.36 -1.2
644 + 15688 mRNA_7320 0.38 -0.8
644 + 15688 mRNA_7320 0.38 -0.0
648 + 15688 mRNA_7320 0.38 +0.2
654 - 15688 mRNA_7320 0.38 -0.1
654 + 15688 mRNA_7320 0.38 +0.5
713 + 15688 mRNA_7320 0.43 -1.4
753 - 15688 mRNA_7320 0.45 +1.8
756 - 15688 mRNA_7320 0.46 -0.9
763 + 15688 mRNA_7320 0.46 -0.9
765 + 15688 mRNA_7320 0.46 +0.1
778 + 15688 mRNA_7320 0.47 +2.0
811 - 15688 mRNA_7320 0.49 +0.1
921 + 15688 mRNA_7320 0.57 +1.1
945 + 15688 mRNA_7320 0.59 -0.2
1,059 + 15688 mRNA_7320 0.67 -1.4
1,167 + 15688 mRNA_7320 0.74 -0.2
1,174 + 15688 mRNA_7320 0.75 +0.3
1,182 - 15688 mRNA_7320 0.75 +0.5
1,196 + 15688 mRNA_7320 0.76 -0.9
1,218 + 15688 mRNA_7320 0.78 +1.1
1,258 + 15688 mRNA_7320 0.81 +2.0
1,326 - 15688 mRNA_7320 0.85 -1.3
1,360 + 15688 mRNA_7320 0.88 +1.0
1,366 + 15688 mRNA_7320 0.88 -1.0
1,497 - -0.3
1,518 + +0.4
1,582 + +1.9
1,666 - +1.7
1,675 + +1.3
1,789 - +0.1
1,907 + +2.0
1,929 + +0.2
1,948 + +4.1
2,105 - -0.7
2,297 - 15689 mRNA_7321 0.19 +0.1
2,508 - 15689 mRNA_7321 0.31 -0.5
2,521 + 15689 mRNA_7321 0.32 -1.7
2,526 + 15689 mRNA_7321 0.32 -0.2
2,529 - 15689 mRNA_7321 0.32 +1.7
2,529 - 15689 mRNA_7321 0.32 +0.2

Or see this region's nucleotide sequence