Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7325

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15692 and 15693 are separated by 190 nucleotides15693 and 15694 are separated by 207 nucleotides mRNA_7324: 15692 - K20967 MOCS1 GTP 3',8-cyclase / cyclic pyranopterin monophosphate synthase, at 8,009 to 10,735 15692 mRNA_7325: 15693 - K01640 E4.1.3.4, HMGCL, hmgL hydroxymethylglutaryl-CoA lyase, at 10,926 to 12,277 15693 mRNA_7326: 15694 - K01969 E6.4.1.4B 3-methylcrotonyl-CoA carboxylase beta subunit, at 12,485 to 14,861 15694

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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10,155 - 15692 mRNA_7324 0.79 -0.3
10,487 - +2.3
10,512 + -2.4
10,628 + +0.4
10,746 + +1.0
10,770 + +0.8
11,170 - 15693 mRNA_7325 0.18 +3.2
11,306 - 15693 mRNA_7325 0.28 +0.8
11,501 - 15693 mRNA_7325 0.43 -0.8
11,631 - 15693 mRNA_7325 0.52 -1.9
11,788 + 15693 mRNA_7325 0.64 +0.8
11,919 + 15693 mRNA_7325 0.73 -0.1
12,049 - 15693 mRNA_7325 0.83 +0.3
12,066 - 15693 mRNA_7325 0.84 +1.5
12,198 - +0.0
12,204 - +0.9
12,223 + -0.7
12,348 + +0.2
12,348 - -0.2
12,349 + +0.7
12,355 - -0.6
12,358 + -2.0
12,360 + +0.9
12,366 - +0.9
12,406 - +2.3
12,528 - -0.2
12,547 - +0.4
13,043 - 15694 mRNA_7326 0.23 +1.7
13,147 - 15694 mRNA_7326 0.28 -0.8
13,160 + 15694 mRNA_7326 0.28 +0.2
13,270 + 15694 mRNA_7326 0.33 -0.4

Or see this region's nucleotide sequence