Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7328

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15695 and 15696 are separated by 297 nucleotides mRNA_7327: 15695 - KOG2883 NIPSNAP1 protein, at 15,080 to 16,504 15695 mRNA_7328: 15696 - KOG1339 Aspartyl protease, at 16,802 to 18,584 15696

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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16,260 - 15695 mRNA_7327 0.83 +0.0
16,270 - 15695 mRNA_7327 0.84 +0.5
16,314 + 15695 mRNA_7327 0.87 +0.9
16,588 + +0.2
16,598 + +1.7
16,769 - -1.4
16,797 + +0.3
17,098 - 15696 mRNA_7328 0.17 -1.8
17,165 + 15696 mRNA_7328 0.20 -0.1
17,318 + 15696 mRNA_7328 0.29 +2.3
17,592 + 15696 mRNA_7328 0.44 +2.9
17,597 - 15696 mRNA_7328 0.45 +1.0
17,708 + 15696 mRNA_7328 0.51 -1.5
17,731 - 15696 mRNA_7328 0.52 -0.4
17,895 - 15696 mRNA_7328 0.61 -1.9
18,001 + 15696 mRNA_7328 0.67 +1.5
18,174 - 15696 mRNA_7328 0.77 +0.2
18,187 + 15696 mRNA_7328 0.78 +1.0
18,193 + 15696 mRNA_7328 0.78 -0.5
18,195 + 15696 mRNA_7328 0.78 +0.3
18,290 - 15696 mRNA_7328 0.83 -1.2
18,345 + 15696 mRNA_7328 0.87 -0.3
18,433 - +0.7
18,488 + +1.3
18,600 - -0.3
18,618 - +1.9
18,813 + -0.7
19,048 - -0.3
19,062 - +0.2
19,122 + -0.4
19,182 - -0.2
19,219 - -1.5
19,227 + -0.3
19,227 + +0.8
19,228 - -2.3
19,336 - +0.0
19,338 - +0.3
19,343 + +0.1
19,356 - -1.7
19,369 - +0.1
19,503 + +0.6

Or see this region's nucleotide sequence