Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7370

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15737 and 15738 are separated by 546 nucleotides15738 and 15739 are separated by 260 nucleotides mRNA_7369: 15737 - KOG1203 Predicted dehydrogenase, at 111,155 to 112,314 15737 mRNA_7370: 15738 - HMMPfam-Oligomerisation domain-PF02410, at 112,861 to 113,422 15738 mRNA_7371: 15739 - Hypothetical Protein, at 113,683 to 115,680 15739

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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111,886 - 15737 mRNA_7369 0.63 +1.1
112,057 - 15737 mRNA_7369 0.78 +1.6
112,217 - -1.1
112,221 + -2.8
112,231 + -0.3
112,232 - -0.6
112,234 + -1.5
112,243 + +0.8
112,359 + -1.3
112,364 - +0.2
112,368 + +0.1
112,370 + +0.2
112,374 + -0.3
112,382 + -0.3
112,394 + +0.8
112,399 + +2.8
113,297 - 15738 mRNA_7370 0.78 +0.0
113,415 - +0.4
113,851 - +2.7
113,987 + 15739 mRNA_7371 0.15 +0.2
114,100 - 15739 mRNA_7371 0.21 -0.2
114,144 + 15739 mRNA_7371 0.23 +0.7
114,287 + 15739 mRNA_7371 0.30 -0.2

Or see this region's nucleotide sequence