Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7372

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15739 and 15740 are separated by 533 nucleotides15740 and 15741 are separated by 532 nucleotides mRNA_7371: 15739 - Hypothetical Protein, at 113,683 to 115,680 15739 mRNA_7372: 15740 - K03869 CUL3 cullin 3, at 116,214 to 119,420 15740 mRNA_7373: 15741 - HMMPfam-FAD binding domain-PF01494,PRINTS-Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature-PR00420,SUPERFAMILY--SSF51905, at 119,953 to 122,182 15741

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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115,380 - 15739 mRNA_7371 0.85 -1.8
115,384 - 15739 mRNA_7371 0.85 +1.2
115,386 + 15739 mRNA_7371 0.85 +2.2
115,502 + -2.3
115,802 - +1.2
115,806 - +0.3
115,825 + -0.0
116,713 - 15740 mRNA_7372 0.16 -0.9
117,011 - 15740 mRNA_7372 0.25 -0.1
117,157 + 15740 mRNA_7372 0.29 +1.2
117,300 + 15740 mRNA_7372 0.34 +0.4
117,593 + 15740 mRNA_7372 0.43 -1.1
117,602 - 15740 mRNA_7372 0.43 +1.3
117,706 - 15740 mRNA_7372 0.47 -1.1
117,881 - 15740 mRNA_7372 0.52 +1.1
117,908 - 15740 mRNA_7372 0.53 +0.5
118,453 - 15740 mRNA_7372 0.70 -1.3
118,483 - 15740 mRNA_7372 0.71 -1.9
119,043 + 15740 mRNA_7372 0.88 -1.9
119,184 - -0.4
119,344 + +0.5
119,362 - +2.1
119,490 + +0.8
119,493 - +0.8
119,629 + -0.8
119,639 - -0.9
119,641 + -0.2
119,648 + +2.9
119,649 + +0.3
119,663 - +0.8
119,807 + -1.0
119,930 - -0.2
120,210 - 15741 mRNA_7373 0.12 +0.7

Or see this region's nucleotide sequence