Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7393

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15760 and 15761 are separated by 173 nucleotides15761 and 15762 are separated by 952 nucleotides mRNA_7392: 15760 - Hypothetical Protein, at 171,609 to 172,297 15760 mRNA_7393: 15761 - HMMPfam-Velvet factor-PF11754, at 172,471 to 174,336 15761 mRNA_7394: 15762 - KOG0569 Permease of the major facilitator superfamily, at 175,289 to 177,598 15762

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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171,486 - -0.4
172,071 + 15760 mRNA_7392 0.67 +2.6
172,940 - 15761 mRNA_7393 0.25 +0.8
173,243 - 15761 mRNA_7393 0.41 +0.7
173,678 - 15761 mRNA_7393 0.65 +0.4
173,843 + 15761 mRNA_7393 0.74 +0.5
173,843 + 15761 mRNA_7393 0.74 -1.2
174,017 + 15761 mRNA_7393 0.83 +1.1
174,264 - -2.2
174,288 + +1.5
174,408 - -1.7
174,445 + -2.8
174,446 + -2.5
174,569 - -0.3
174,579 - -2.5
174,582 - -3.3
174,584 - +0.0
174,593 + +0.6
174,597 - -1.4
174,601 + +0.2
174,606 - +1.9
174,618 - +0.2
174,622 + +0.5
174,622 + -0.3
174,634 + -0.6
174,636 + -1.0
174,639 - -0.2
174,652 - +0.2
174,662 - -0.3
174,707 + +0.7
174,713 + -0.1
174,730 - +1.3
174,747 - +1.4
174,749 - +0.9
174,812 + +0.7
174,815 + +0.7
174,826 + +0.1
174,852 + -0.6
174,852 + +0.4
174,853 - -0.2
174,861 - +1.0
174,866 - +0.6
174,877 + +1.9
174,888 - +0.1
174,889 - +0.9
174,893 + +2.2
174,893 - -0.0
174,898 + +0.4
174,907 + -2.0
174,911 - +0.9
174,912 - +1.4
174,912 - +0.8
174,914 + -0.7
174,919 + +1.3
174,927 + +0.7
174,939 + -0.1
174,942 + -0.3
175,026 - +0.4
175,055 + +0.1
175,071 - +0.6
175,077 - -0.7
175,079 - -0.5
175,215 - -0.2
175,222 + -1.2

Or see this region's nucleotide sequence