Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7399

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15766 and 15767 are separated by 283 nucleotides15767 and 15768 are separated by 163 nucleotides mRNA_7398: 15766 - KOG0266 WD40 repeat-containing protein, at 184,149 to 185,888 15766 mRNA_7399: 15767 - K12859 TXNL4A, DIB1 U5 snRNP protein, DIM1 family, at 186,172 to 187,240 15767 mRNA_7400: 15768 - K08075 E3.1.3.32 polynucleotide 3'-phosphatase, at 187,404 to 189,530 15768

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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185,523 + 15766 mRNA_7398 0.79 -1.9
185,529 - 15766 mRNA_7398 0.79 +0.8
185,655 + 15766 mRNA_7398 0.87 +1.9
185,960 - +2.3
187,662 - 15768 mRNA_7400 0.12 -0.2

Or see this region's nucleotide sequence