Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7418

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15785 and 15786 are separated by 919 nucleotides15786 and 15787 are separated by 942 nucleotides mRNA_7417: 15785 - K03353 APC6, CDC16 anaphase-promoting complex subunit 6, at 230,745 to 233,451 15785 mRNA_7418: 15786 - Hypothetical Protein, at 234,371 to 235,150 15786 mRNA_7419: 15787 - Hypothetical Protein, at 236,093 to 236,724 15787

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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233,445 + +2.6
233,723 + -0.1
233,741 - -0.2
233,817 - -0.2
233,817 + +0.6
233,828 - -0.2
233,855 + +0.1
234,012 + -0.3
234,158 + -0.1
234,254 - -2.9
234,280 + +0.3
234,283 + -1.0
234,300 - +0.3
234,305 + -0.4
234,321 + +0.6
234,326 + +1.7
234,342 - +0.8
234,344 + +1.8
234,369 + +0.4
234,456 - 15786 mRNA_7418 0.11 -0.2
234,460 + 15786 mRNA_7418 0.11 +0.5
234,465 - 15786 mRNA_7418 0.12 -3.4
234,473 + 15786 mRNA_7418 0.13 -0.2
234,477 + 15786 mRNA_7418 0.14 +0.1
234,492 + 15786 mRNA_7418 0.16 -0.1
234,504 + 15786 mRNA_7418 0.17 +1.4
234,507 + 15786 mRNA_7418 0.17 -1.0
234,548 - 15786 mRNA_7418 0.23 -1.0
234,550 + 15786 mRNA_7418 0.23 +1.2
234,551 + 15786 mRNA_7418 0.23 -0.2
234,579 - 15786 mRNA_7418 0.27 +0.7
234,613 - 15786 mRNA_7418 0.31 +0.6
234,620 + 15786 mRNA_7418 0.32 +1.6
234,631 + 15786 mRNA_7418 0.33 -0.1
234,633 - 15786 mRNA_7418 0.34 +1.0
234,634 + 15786 mRNA_7418 0.34 -0.1
234,639 + 15786 mRNA_7418 0.34 +0.0
234,639 + 15786 mRNA_7418 0.34 -0.6
234,663 - 15786 mRNA_7418 0.37 +3.0
234,699 + 15786 mRNA_7418 0.42 +1.2
234,788 - 15786 mRNA_7418 0.53 -0.3
234,798 - 15786 mRNA_7418 0.55 -1.5
234,798 + 15786 mRNA_7418 0.55 +1.5
234,799 + 15786 mRNA_7418 0.55 -0.2
234,806 - 15786 mRNA_7418 0.56 +0.3
234,811 + 15786 mRNA_7418 0.56 -0.2
234,811 + 15786 mRNA_7418 0.56 -0.3
234,814 - 15786 mRNA_7418 0.57 -0.2
234,814 + 15786 mRNA_7418 0.57 +1.5
234,821 + 15786 mRNA_7418 0.58 -1.3
234,845 - 15786 mRNA_7418 0.61 +0.4
234,935 - 15786 mRNA_7418 0.72 -2.8
234,965 + 15786 mRNA_7418 0.76 -0.2
235,109 - -0.2
235,115 - -0.4
235,121 + +0.0
235,271 - +1.2
235,280 + +1.7
235,545 - -1.5
235,701 + -1.3
235,824 - -0.3
235,989 + +2.4

Or see this region's nucleotide sequence