Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7429

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15796 and 15797 are separated by 52 nucleotides15797 and 15798 are separated by 644 nucleotides mRNA_7428: 15796 - Interpro XLF-Cernunnos, XRcc4-like factor, NHEJ component, at 251,137 to 252,658 15796 mRNA_7429: 15797 - KOG0254 Predicted transporter (major facilitator superfamily), at 252,711 to 255,477 15797 mRNA_7430: 15798 - HMMPfam-Methyltransferase domain-PF13489,SUPERFAMILY--SSF53335, at 256,122 to 258,039 15798

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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252,155 - 15796 mRNA_7428 0.67 -0.1
252,169 + 15796 mRNA_7428 0.68 -0.2
252,622 + -0.6
252,895 + -0.4
253,018 - 15797 mRNA_7429 0.11 +0.7
253,050 - 15797 mRNA_7429 0.12 -0.1
253,513 - 15797 mRNA_7429 0.29 +0.8
253,707 - 15797 mRNA_7429 0.36 -0.5
254,227 - 15797 mRNA_7429 0.55 -0.5
254,475 + 15797 mRNA_7429 0.64 +0.8
255,086 + 15797 mRNA_7429 0.86 -0.9
255,443 + +0.5
255,528 - -0.0
255,532 + +1.9
255,564 - +1.2
255,570 + -0.1
255,571 - +0.4
255,574 + -1.4
255,574 + +0.5
255,586 + -0.7
255,704 - +0.7
255,723 - -0.3
255,884 + +0.4
255,892 - +2.0
255,992 - -0.9
256,033 - -0.1
256,044 + -0.1
256,047 - +0.3
256,178 + -0.5

Or see this region's nucleotide sequence