Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7449

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15816 and 15817 are separated by 149 nucleotides15817 and 15818 are separated by 421 nucleotides mRNA_7448: 15816 - BLAST putative protein of unknown function [Pseudozyma ..., at 301,730 to 303,793 15816 mRNA_7449: 15817 - BLAST GH19984 [Drosophila grimshawi], at 303,943 to 305,130 15817 mRNA_7450: 15818 - BLAST proteophosphoglycan protein, putative [Rhizoctonia so..., at 305,552 to 306,799 15818

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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303,822 - +0.4
304,104 - 15817 mRNA_7449 0.14 -0.2
304,108 - 15817 mRNA_7449 0.14 +0.7
304,396 - 15817 mRNA_7449 0.38 +0.0
305,275 - +0.1
305,894 + 15818 mRNA_7450 0.27 -2.0

Or see this region's nucleotide sequence