Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7504

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15871 and 15872 are separated by 682 nucleotides15872 and 15873 are separated by 67 nucleotides mRNA_7503: 15871 - Hypothetical Protein, at 447,770 to 449,407 15871 mRNA_7504: 15872 - KOG0621 Phospholipid scramblase, at 450,090 to 451,358 15872 mRNA_7505: 15873 - KOG3292 Predicted membrane protein, at 451,426 to 452,379 15873

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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449,483 + -0.3
449,505 - +1.7
449,582 + +2.2
449,606 + +2.6
449,918 + -0.3
449,929 + +1.5
450,228 - 15872 mRNA_7504 0.11 -0.6
450,234 + 15872 mRNA_7504 0.11 +1.1
450,326 - 15872 mRNA_7504 0.19 -0.2
450,327 + 15872 mRNA_7504 0.19 -0.2
450,359 + 15872 mRNA_7504 0.21 +0.8
450,633 - 15872 mRNA_7504 0.43 -1.5
451,224 + 15872 mRNA_7504 0.89 -1.1
451,376 - +0.6
451,390 + -0.2
451,392 + -0.1
451,398 + +0.1
451,849 + 15873 mRNA_7505 0.44 +1.2

Or see this region's nucleotide sequence