Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7515

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15882 and 15883 are separated by 349 nucleotides15883 and 15884 are separated by 528 nucleotides mRNA_7514: 15882 - K11757 PBRM1, PB1 protein polybromo-1, at 471,027 to 473,637 15882 mRNA_7515: 15883 - K07827 KRAS, KRAS2 GTPase KRas, at 473,987 to 475,256 15883 mRNA_7516: 15884 - HMMPfam-Protoglobin-PF11563, at 475,785 to 476,732 15884

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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473,232 - 15882 mRNA_7514 0.84 +0.7
473,232 - 15882 mRNA_7514 0.84 -3.1
473,283 - 15882 mRNA_7514 0.86 +0.8
473,371 - 15882 mRNA_7514 0.90 +0.1
473,380 + -0.4
473,380 + +0.4
473,402 + -0.7
473,403 + -0.4
473,405 + -1.4
473,663 - +0.8
473,669 + +0.5
473,673 - +0.1
473,679 - +1.5
473,758 + -0.2
473,856 - +0.1
473,907 - -0.6
474,014 + +0.0
474,017 + -0.1
474,151 - 15883 mRNA_7515 0.13 +2.0
474,161 + 15883 mRNA_7515 0.14 -0.1
474,172 - 15883 mRNA_7515 0.15 +0.5
474,420 - 15883 mRNA_7515 0.34 -0.0
474,497 + 15883 mRNA_7515 0.40 +0.3
474,498 + 15883 mRNA_7515 0.40 +0.6
474,590 + 15883 mRNA_7515 0.47 -0.1
474,617 - 15883 mRNA_7515 0.50 +0.1
474,632 - 15883 mRNA_7515 0.51 -0.4
474,641 + 15883 mRNA_7515 0.51 +0.5
474,656 - 15883 mRNA_7515 0.53 -0.9
474,678 - 15883 mRNA_7515 0.54 +0.3
474,680 - 15883 mRNA_7515 0.55 +0.6
474,693 - 15883 mRNA_7515 0.56 +0.9
474,701 - 15883 mRNA_7515 0.56 -0.2
474,701 + 15883 mRNA_7515 0.56 +0.2
474,705 + 15883 mRNA_7515 0.57 +1.4
474,716 + 15883 mRNA_7515 0.57 +1.0
474,719 - 15883 mRNA_7515 0.58 -1.3
474,731 + 15883 mRNA_7515 0.59 -0.4
474,788 + 15883 mRNA_7515 0.63 -1.0
474,789 - 15883 mRNA_7515 0.63 -0.8
474,796 + 15883 mRNA_7515 0.64 +0.6
474,796 + 15883 mRNA_7515 0.64 +1.3
474,798 + 15883 mRNA_7515 0.64 +0.3
474,804 + 15883 mRNA_7515 0.64 +1.2
474,818 - 15883 mRNA_7515 0.65 +0.3
474,833 + 15883 mRNA_7515 0.67 +0.1
474,833 - 15883 mRNA_7515 0.67 -0.4
474,844 - 15883 mRNA_7515 0.67 +2.5
474,849 + 15883 mRNA_7515 0.68 +0.4
474,862 - 15883 mRNA_7515 0.69 +0.4
474,872 - 15883 mRNA_7515 0.70 -0.3
474,876 - 15883 mRNA_7515 0.70 +0.5
474,897 - 15883 mRNA_7515 0.72 +0.7
474,903 + 15883 mRNA_7515 0.72 +1.2
474,905 + 15883 mRNA_7515 0.72 -0.4
474,927 + 15883 mRNA_7515 0.74 +0.0
474,928 + 15883 mRNA_7515 0.74 +0.6
474,937 - 15883 mRNA_7515 0.75 -0.5
474,949 - 15883 mRNA_7515 0.76 -0.6
474,981 + 15883 mRNA_7515 0.78 +1.5
475,001 - 15883 mRNA_7515 0.80 -1.0
475,009 - 15883 mRNA_7515 0.80 -1.6
475,027 + 15883 mRNA_7515 0.82 +0.4
475,033 - 15883 mRNA_7515 0.82 +1.4
475,043 + 15883 mRNA_7515 0.83 -0.6
475,063 - 15883 mRNA_7515 0.85 +0.1
475,064 + 15883 mRNA_7515 0.85 -0.8
475,066 + 15883 mRNA_7515 0.85 -0.8
475,225 - +1.2
475,314 + +1.5
475,317 - -1.4
475,330 - -0.9
475,336 + +0.4
475,338 + +0.4
475,340 + +1.2
475,365 - -0.4
475,490 - +0.2
475,494 - +1.6
475,513 + -0.2
475,549 + +0.5
475,647 - +0.3
475,651 - +0.1
475,664 - +0.0
475,672 - +1.1
475,682 - -0.6
475,686 + -0.6
475,820 - +0.6
475,959 - 15884 mRNA_7516 0.18 -1.1

Or see this region's nucleotide sequence