Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7532

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15899 and 15900 are separated by 128 nucleotides15900 and 15901 are separated by 87 nucleotides mRNA_7531: 15899 - K14001 SIL1, SLS1 nucleotide exchange factor SIL1, at 504,183 to 505,474 15899 mRNA_7532: 15900 - K01896 ACSM medium-chain acyl-CoA synthetase, at 505,603 to 507,822 15900 mRNA_7533: 15901 - K10885 XRCC5, KU80, G22P2 ATP-dependent DNA helicase 2 subunit 2, at 507,910 to 511,338 15901

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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505,234 + 15899 mRNA_7531 0.81 +2.1
505,475 + +1.2
505,476 - +0.5
505,476 - -0.3
505,491 + +1.9
505,493 - +1.2
505,494 - +0.3
505,499 + -0.7
505,510 - -0.0
505,515 - +0.6
505,519 + -0.7
505,521 - -0.3
505,529 - -0.6
505,582 + -0.4
506,048 - 15900 mRNA_7532 0.20 -0.5
506,369 - 15900 mRNA_7532 0.35 +0.2
507,139 - 15900 mRNA_7532 0.69 +0.2
507,450 - 15900 mRNA_7532 0.83 +0.0
508,026 + +0.1
508,225 - -1.1
508,552 - 15901 mRNA_7533 0.19 +1.3
508,608 - 15901 mRNA_7533 0.20 +1.5

Or see this region's nucleotide sequence