Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7538

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15905 and 15906 are separated by 279 nucleotides mRNA_7537: 15905 - K13524 ABAT 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase, at 514,808 to 517,082 15905 mRNA_7538: 15906 - BLAST allergen [Malassezia sympodialis ATCC 42132], at 517,362 to 518,534 15906

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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516,412 - 15905 mRNA_7537 0.71 +0.5
516,420 + 15905 mRNA_7537 0.71 +0.1
517,385 - +0.0
518,628 - +1.5
518,658 - +0.8
518,667 + -0.6
518,756 + +1.9
518,900 + +1.5
518,937 + -0.7
518,947 + +0.6
518,959 - +2.2
518,977 + -2.6
519,067 + -1.6
519,115 + +2.3
519,121 - -0.5
519,125 + +0.7
519,142 + -0.2
519,146 - -1.8
519,157 + -2.0
519,162 + +0.1
519,189 - -0.3
519,199 - -0.2
519,226 - -0.4
519,244 - +0.3
519,265 + -0.3
519,373 - -1.1
519,386 - +2.0
519,515 - +0.4
519,530 - -0.3

Or see this region's nucleotide sequence