Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7571

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15938 and 15939 are separated by 423 nucleotides15939 and 15940 are separated by 356 nucleotides mRNA_7570: 15938 - K03138 TFIIF1, GTF2F1, TFG1 transcription initiation factor TFIIF subunit alpha, at 591,507 to 593,664 15938 mRNA_7571: 15939 - K11450 KDM1A, AOF2, LSD1 lysine-specific histone demethylase 1A, at 594,088 to 595,626 15939 mRNA_7572: 15940 - Hypothetical Protein, at 595,983 to 596,534 15940

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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594,874 - 15939 mRNA_7571 0.51 +0.7
595,060 + 15939 mRNA_7571 0.63 -2.7
595,941 - -0.9
596,365 + 15940 mRNA_7572 0.69 +1.3

Or see this region's nucleotide sequence