Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7598

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15965 and 15966 are separated by 237 nucleotides15966 and 15967 are separated by 272 nucleotides mRNA_7597: 15965 - Hypothetical Protein, at 648,262 to 649,679 15965 mRNA_7598: 15966 - K01102 PDP pyruvate dehydrogenase phosphatase, at 649,917 to 652,257 15966 mRNA_7599: 15967 - K01900 LSC2 succinyl-CoA synthetase beta subunit, at 652,530 to 654,489 15967

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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649,134 - 15965 mRNA_7597 0.61 +1.6
649,274 - 15965 mRNA_7597 0.71 +0.8
649,572 - +0.6
649,578 - +1.5
649,579 + +1.2
649,717 + +0.5
649,730 + +0.8
649,873 + -0.3
649,875 - -0.3
650,023 + +1.1
650,187 + 15966 mRNA_7598 0.12 -2.3
650,308 - 15966 mRNA_7598 0.17 +0.5
650,322 - 15966 mRNA_7598 0.17 +0.2
650,341 + 15966 mRNA_7598 0.18 +1.2
650,353 + 15966 mRNA_7598 0.19 -0.4
650,622 + 15966 mRNA_7598 0.30 +0.0
650,694 - 15966 mRNA_7598 0.33 -1.6
651,326 - 15966 mRNA_7598 0.60 +1.7
651,381 - 15966 mRNA_7598 0.63 -0.4
651,479 + 15966 mRNA_7598 0.67 +0.2
651,612 - 15966 mRNA_7598 0.72 +0.2
651,757 + 15966 mRNA_7598 0.79 +0.7
651,873 - 15966 mRNA_7598 0.84 +2.1
651,910 + 15966 mRNA_7598 0.85 -0.7
651,911 - 15966 mRNA_7598 0.85 -0.8
652,050 + +0.9
652,060 + +0.1
652,490 - -0.7

Or see this region's nucleotide sequence