Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7602

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15969 and 15970 are separated by 320 nucleotides15970 and 15971 are separated by 711 nucleotides mRNA_7601: 15969 - K09521 DNAJC1 DnaJ homolog subfamily C member 1, at 656,888 to 658,260 15969 mRNA_7602: 15970 - Hypothetical Protein, at 658,581 to 659,564 15970 mRNA_7603: 15971 - SUPERFAMILY--SSF54427, at 660,276 to 661,317 15971

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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658,050 + 15969 mRNA_7601 0.85 -0.3
658,150 + +1.3
658,188 + +0.1
658,301 - +1.5
658,316 - -0.3
658,324 - +0.7
658,325 - -0.1
658,332 + +0.9
658,336 + -0.5
658,338 - -0.6
658,342 + -1.1
658,527 + -1.5
658,643 + -0.2
658,655 + -1.0
658,753 + 15970 mRNA_7602 0.17 -0.6
658,774 - 15970 mRNA_7602 0.20 +0.7
658,781 + 15970 mRNA_7602 0.20 -0.1
658,787 + 15970 mRNA_7602 0.21 -1.7
658,920 + 15970 mRNA_7602 0.34 +1.2
659,071 - 15970 mRNA_7602 0.50 -0.3
659,507 - +1.4
659,647 + -1.2
659,946 + -1.2
659,954 + +0.8
659,955 - +0.9
659,965 + -0.6
660,012 + +1.0
660,012 + +0.6
660,099 + -0.2
660,100 - +0.1
660,123 + -0.3
660,280 + -0.2
660,562 - 15971 mRNA_7603 0.27 -0.8

Or see this region's nucleotide sequence