Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7707

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16075 and 16076 are separated by 343 nucleotides mRNA_7707: 16075 - HMMPfam-PAZ domain-PF02170,HMMPfam-Piwi domain-PF02171,HMMPfam-Domain of unknown function (DUF1785)-PF08699,ProSiteProfiles-PAZ domain profile.-PS50821,ProSiteProfiles-Piwi domain profile.-PS50822,SMART--SM00950,SUPERFAMILY--SSF101690,SUPERFAMILY--SSF53098, at 895,894 to 899,712 16075 mRNA_7708: 16076 - Hypothetical Protein, at 900,056 to 901,517 16076

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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894,931 + +0.1
894,940 + -0.3
895,059 + +0.4
895,214 - -1.0
895,326 - +0.3
895,404 + +1.1
895,524 + +2.2
895,594 - +1.5
895,644 + +0.4
895,767 - +1.2
895,810 - +1.1
895,820 - -0.0
895,821 - -0.4
895,828 - +0.6
895,830 - -0.1
895,831 + -1.4
895,839 + +1.4
895,965 - +0.9
895,966 - -0.4
895,974 - +0.4
896,112 - -0.0
896,269 + +0.9
896,274 - -1.8
896,314 + 16075 mRNA_7707 0.11 +3.0
896,732 + 16075 mRNA_7707 0.22 +0.4
897,163 - 16075 mRNA_7707 0.33 +0.5
897,396 - 16075 mRNA_7707 0.39 +0.3
897,451 + 16075 mRNA_7707 0.41 +0.3
897,524 + 16075 mRNA_7707 0.43 -0.1
897,594 - 16075 mRNA_7707 0.45 -1.1
897,746 + 16075 mRNA_7707 0.48 +0.9
898,330 - 16075 mRNA_7707 0.64 +0.2
898,461 - 16075 mRNA_7707 0.67 -0.0
898,598 - 16075 mRNA_7707 0.71 +2.2
899,295 - 16075 mRNA_7707 0.89 -0.1
899,357 - -0.0
899,381 + -0.1
899,460 - -1.0
899,612 - -1.2
899,804 + -0.0
899,867 + +1.9
899,889 - +0.0
900,081 - -0.2
900,103 + +1.6

Or see this region's nucleotide sequence