Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7785

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16152 and 16153 are separated by 426 nucleotides16153 and 16154 are separated by 565 nucleotides mRNA_7784: 16152 - HMMPfam-Tetratricopeptide repeat-PF00515,HMMPfam-TPR repeat-PF13414,ProSiteProfiles-TPR repeat profile.-PS50005,ProSiteProfiles-TPR repeat region circular profile.-PS50293,SMART-Tetratricopeptide repeats-SM00028,SUPERFAMILY--SSF48452, at 1,060,507 to 1,063,006 16152 mRNA_7785: 16153 - HMMPfam-Tetratricopeptide repeat-PF00515,HMMPfam-TPR repeat-PF13414,ProSiteProfiles-TPR repeat profile.-PS50005,ProSiteProfiles-TPR repeat region circular profile.-PS50293,SMART-Tetratricopeptide repeats-SM00028,SUPERFAMILY--SSF48452, at 1,063,433 to 1,065,460 16153 mRNA_7786: 16154 - HMMPfam-Centromere-associated protein K-PF11802, at 1,066,026 to 1,067,472 16154

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,062,901 + -2.1
1,062,906 + +0.7
1,062,909 - +0.9
1,062,920 + +1.5
1,062,949 + +0.4
1,063,000 - +0.4
1,063,069 - +0.5
1,063,188 - +0.3
1,063,201 + +0.2
1,063,206 + -0.2
1,063,207 - -0.9
1,063,216 - +0.5
1,063,224 + -1.9
1,063,243 + +0.1
1,063,323 - -0.1
1,063,324 - -0.1
1,063,337 - +1.1
1,063,338 + -1.6
1,063,341 - -0.5
1,063,350 - +1.0
1,063,430 - +1.8
1,063,440 + +1.3
1,063,453 - +1.3
1,063,630 + -0.0
1,063,657 + 16153 mRNA_7785 0.11 +0.6
1,063,779 + 16153 mRNA_7785 0.17 +0.5
1,063,936 + 16153 mRNA_7785 0.25 +0.3
1,064,142 - 16153 mRNA_7785 0.35 -0.6
1,064,143 - 16153 mRNA_7785 0.35 -0.6
1,064,203 + 16153 mRNA_7785 0.38 +0.1
1,064,238 - 16153 mRNA_7785 0.40 -0.9
1,064,609 - 16153 mRNA_7785 0.58 +0.9
1,064,650 - 16153 mRNA_7785 0.60 -1.6
1,064,660 - 16153 mRNA_7785 0.61 +0.6
1,064,911 - 16153 mRNA_7785 0.73 -3.1
1,064,952 + 16153 mRNA_7785 0.75 +0.3
1,065,124 + 16153 mRNA_7785 0.83 -1.3
1,065,356 - -2.2
1,065,357 + +1.1
1,065,358 - -0.8
1,065,361 + +2.1
1,065,363 + +1.6
1,065,501 - +0.2
1,065,501 - -0.2
1,065,651 - +1.1
1,065,656 + -0.6
1,065,674 + +0.7
1,065,690 - -0.3
1,065,799 + -1.5
1,065,819 + +0.5
1,066,091 - +0.5
1,066,098 + -1.6
1,066,099 - +0.4
1,066,240 + 16154 mRNA_7786 0.15 +0.3

Or see this region's nucleotide sequence