Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7802

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16169 and 16170 are separated by 506 nucleotides mRNA_7801: 16169 - ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 1,099,956 to 1,102,203 16169 mRNA_7802: 16170 - KOG3519 Invasion-inducing protein TIAM1/CDC24 and related RhoGEF GTPases, at 1,102,710 to 1,107,641 16170

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,102,072 + +0.2
1,102,213 - +0.8
1,102,380 + +0.4
1,102,430 + +1.7
1,102,499 - +0.2
1,102,524 + +0.3
1,102,685 + +0.1
1,103,253 - 16170 mRNA_7802 0.11 +0.4
1,103,372 + 16170 mRNA_7802 0.13 -0.5
1,103,523 - 16170 mRNA_7802 0.16 -2.6
1,104,026 + 16170 mRNA_7802 0.27 +1.4
1,104,261 + 16170 mRNA_7802 0.31 +0.6
1,104,456 + 16170 mRNA_7802 0.35 -0.0
1,105,119 + 16170 mRNA_7802 0.49 -1.7
1,105,396 + 16170 mRNA_7802 0.54 +0.8
1,105,713 - 16170 mRNA_7802 0.61 +2.5
1,105,734 - 16170 mRNA_7802 0.61 +0.0
1,106,022 - 16170 mRNA_7802 0.67 -1.4
1,106,133 - 16170 mRNA_7802 0.69 -1.0
1,106,341 + 16170 mRNA_7802 0.74 +0.4
1,106,354 - 16170 mRNA_7802 0.74 -1.4
1,106,609 + 16170 mRNA_7802 0.79 +2.3
1,106,760 - 16170 mRNA_7802 0.82 -0.2
1,107,198 - +0.5
1,107,516 - +2.6
1,107,528 + +3.0
1,107,533 - -0.4
1,107,678 + +0.3
1,107,683 + +0.0
1,107,691 - +1.0
1,107,791 - -0.6
1,107,808 + +0.1
1,107,829 - +0.6
1,107,830 + +0.2
1,107,833 - -0.7
1,107,844 + -0.3
1,107,851 + -0.6
1,107,853 - -0.3
1,107,873 - -0.7
1,107,983 - -0.2
1,108,033 - -0.6
1,108,044 - -1.2
1,108,059 - +2.5
1,108,153 - -1.7
1,108,168 - +0.6
1,108,169 + +2.0
1,108,169 + +1.6
1,108,176 - -0.1
1,108,177 - +1.1
1,108,179 - -0.5
1,108,187 - +2.3
1,108,190 + +0.3
1,108,190 + +1.5
1,108,207 - +1.4
1,108,211 - -0.3
1,108,212 - -1.4
1,108,236 - -0.3
1,108,236 - -0.7
1,108,237 + +0.1
1,108,247 - +2.1
1,108,259 + +1.7
1,108,261 - +0.5
1,108,262 + +0.3

Or see this region's nucleotide sequence