Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7812

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16179 and 16180 are separated by 403 nucleotides16180 and 16181 are separated by 401 nucleotides mRNA_7811: 16179 - Hypothetical Protein, at 1,125,900 to 1,126,824 16179 mRNA_7812: 16180 - K12876 RBM8A, Y14 RNA-binding protein 8A, at 1,127,228 to 1,128,549 16180 mRNA_7813: 16181 - K01476 E3.5.3.1, rocF, arg arginase, at 1,128,951 to 1,130,543 16181

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,126,453 - 16179 mRNA_7811 0.60 +0.3
1,126,588 + 16179 mRNA_7811 0.74 -0.9
1,126,744 - -0.1
1,126,842 - -0.2
1,126,897 - -1.0
1,127,162 - -0.4
1,127,276 - -1.6
1,127,303 - -0.4
1,127,312 - -0.4
1,127,337 + -2.4
1,127,342 - -0.0
1,128,622 + +0.0
1,128,653 - +0.2
1,128,678 + +0.6
1,128,807 + +1.2
1,128,834 - +1.5
1,128,915 + +0.5
1,128,948 - +1.3

Or see this region's nucleotide sequence