Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7826

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16193 and 16194 are separated by 261 nucleotides16194 and 16195 are separated by 664 nucleotides mRNA_7825: 16193 - K00759 APRT, apt adenine phosphoribosyltransferase, at 1,153,417 to 1,154,602 16193 mRNA_7826: 16194 - KOG2533 Permease of the major facilitator superfamily, at 1,154,864 to 1,157,345 16194 mRNA_7827: 16195 - KOG4680 Uncharacterized conserved protein, contains ML domain, at 1,158,010 to 1,158,995 16195

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,153,953 - 16193 mRNA_7825 0.45 +0.1
1,154,085 - 16193 mRNA_7825 0.56 +0.3
1,154,100 + 16193 mRNA_7825 0.58 -2.0
1,154,516 - +0.3
1,154,674 - +0.4
1,154,813 - -1.1
1,154,816 + +0.7
1,155,409 - 16194 mRNA_7826 0.22 -1.7
1,155,565 - 16194 mRNA_7826 0.28 +1.0
1,155,571 + 16194 mRNA_7826 0.28 -1.8
1,156,411 + 16194 mRNA_7826 0.62 +0.4
1,156,589 + 16194 mRNA_7826 0.70 +0.4
1,156,702 - 16194 mRNA_7826 0.74 -0.2
1,156,710 + 16194 mRNA_7826 0.74 -0.2
1,157,279 - +0.8
1,157,305 + -2.5
1,157,312 + -0.6
1,157,344 - -0.6
1,157,566 + -0.5
1,157,582 + -0.1
1,157,723 - -0.9
1,157,743 - -0.0
1,157,748 - +1.0
1,157,762 - +0.2
1,157,773 + -1.4
1,157,785 + -0.3
1,157,798 + -0.6
1,157,870 + -0.9
1,157,882 + -0.4
1,157,998 + +0.1
1,158,014 + +0.6
1,158,183 + 16195 mRNA_7827 0.18 -1.1
1,158,221 + 16195 mRNA_7827 0.21 -1.2

Or see this region's nucleotide sequence