Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7829

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16196 and 16197 are separated by 363 nucleotides16197 and 16198 are separated by 958 nucleotides mRNA_7828: 16196 - K01940 argG, ASS1 argininosuccinate synthase, at 1,159,228 to 1,161,010 16196 mRNA_7829: 16197 - K06126 COQ6 ubiquinone biosynthesis monooxygenase Coq6, at 1,161,374 to 1,163,565 16197 mRNA_7830: 16198 - Hypothetical Protein, at 1,164,524 to 1,165,220 16198

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,160,492 + 16196 mRNA_7828 0.71 -2.5
1,160,632 + 16196 mRNA_7828 0.79 -2.0
1,160,765 + 16196 mRNA_7828 0.86 -2.0
1,160,908 - -3.2
1,160,927 + -3.0
1,160,930 + -1.2
1,161,056 - +0.4
1,161,203 - -0.1
1,161,220 - -0.3
1,161,221 - +1.2
1,161,229 - +0.8
1,161,245 - -0.8
1,161,361 - -0.3
1,161,366 - -0.1
1,161,370 + -0.4
1,162,011 + 16197 mRNA_7829 0.29 -0.9
1,163,396 + +0.4
1,163,460 + -0.6
1,163,551 + +0.6
1,163,658 - -0.6
1,164,139 + +1.2
1,164,392 + +0.4

Or see this region's nucleotide sequence