Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7887

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16254 and 16255 are separated by 681 nucleotides16255 and 16256 are separated by 206 nucleotides mRNA_7886: 16254 - KOG2913 Predicted membrane protein, at 1,300,856 to 1,302,140 16254 mRNA_7887: 16255 - HMMPfam-Uncharacterized conserved protein (DUF2183)-PF09949, at 1,302,822 to 1,306,124 16255 mRNA_7888: 16256 - K12274 SEC72 translocation protein SEC72, at 1,306,331 to 1,307,074 16256

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,301,876 + 16254 mRNA_7886 0.79 -0.3
1,301,888 - 16254 mRNA_7886 0.80 +0.9
1,302,011 - 16254 mRNA_7886 0.90 -0.0
1,302,129 - +1.9
1,302,139 - -1.0
1,302,145 - -0.4
1,302,323 + -0.4
1,302,328 + +0.4
1,302,340 - +2.2
1,302,347 + -0.0
1,302,761 - -0.1
1,302,768 - -0.4
1,302,790 + +2.1
1,302,801 + +1.1
1,302,804 - +0.9
1,302,820 + +0.0
1,303,343 - 16255 mRNA_7887 0.16 +2.0
1,303,370 + 16255 mRNA_7887 0.17 -0.8
1,303,524 + 16255 mRNA_7887 0.21 +0.4
1,303,567 + 16255 mRNA_7887 0.23 +0.3
1,303,662 + 16255 mRNA_7887 0.25 +0.6
1,303,812 + 16255 mRNA_7887 0.30 +0.6
1,304,234 + 16255 mRNA_7887 0.43 -0.5
1,304,267 + 16255 mRNA_7887 0.44 -1.8
1,304,543 + 16255 mRNA_7887 0.52 +0.6
1,304,991 + 16255 mRNA_7887 0.66 -0.7
1,305,090 - 16255 mRNA_7887 0.69 -0.0
1,305,357 - 16255 mRNA_7887 0.77 -0.6
1,305,399 + 16255 mRNA_7887 0.78 +0.9
1,305,553 + 16255 mRNA_7887 0.83 +0.8
1,305,683 + 16255 mRNA_7887 0.87 -0.2
1,306,014 - -0.3
1,306,111 + +1.4
1,306,127 + -0.3
1,306,273 - +1.8
1,306,719 - 16256 mRNA_7888 0.52 -1.9
1,307,029 - +0.4

Or see this region's nucleotide sequence