Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7894

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16261 and 16262 are separated by 278 nucleotides mRNA_7893: 16261 - KOG0928 Pattern-formation protein/guanine nucleotide exchange factor, at 1,314,179 to 1,318,508 16261 mRNA_7894: 16262 - HMMPfam-Eisosome component PIL1-PF13805, at 1,318,787 to 1,321,877 16262

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,317,806 + 16261 mRNA_7893 0.84 -0.2
1,318,070 - 16261 mRNA_7893 0.90 +0.1
1,318,339 + -0.3
1,318,551 + +0.2
1,318,803 + +2.4
1,318,883 + -1.2
1,319,109 + 16262 mRNA_7894 0.10 -0.4
1,319,155 - 16262 mRNA_7894 0.12 +0.2
1,319,237 + 16262 mRNA_7894 0.15 -0.1
1,319,254 + 16262 mRNA_7894 0.15 +1.1
1,319,514 - 16262 mRNA_7894 0.24 +0.1
1,319,521 - 16262 mRNA_7894 0.24 +0.8
1,319,578 + 16262 mRNA_7894 0.26 -0.3
1,319,588 + 16262 mRNA_7894 0.26 -1.0
1,319,593 - 16262 mRNA_7894 0.26 +3.2
1,319,693 + 16262 mRNA_7894 0.29 +0.3
1,319,749 - 16262 mRNA_7894 0.31 -1.7
1,319,768 + 16262 mRNA_7894 0.32 +1.9
1,319,791 + 16262 mRNA_7894 0.32 +1.0
1,319,795 - 16262 mRNA_7894 0.33 -0.3
1,319,918 + 16262 mRNA_7894 0.37 +0.3
1,320,029 + 16262 mRNA_7894 0.40 -0.4
1,320,148 + 16262 mRNA_7894 0.44 +0.8
1,320,337 + 16262 mRNA_7894 0.50 +2.0
1,320,465 + 16262 mRNA_7894 0.54 +0.4
1,320,465 + 16262 mRNA_7894 0.54 -0.2
1,320,468 - 16262 mRNA_7894 0.54 -0.8
1,320,470 - 16262 mRNA_7894 0.54 +1.0
1,320,481 - 16262 mRNA_7894 0.55 +0.6
1,320,513 - 16262 mRNA_7894 0.56 +0.8
1,320,591 - 16262 mRNA_7894 0.58 +0.8
1,320,591 - 16262 mRNA_7894 0.58 +0.4
1,320,608 - 16262 mRNA_7894 0.59 +0.2
1,320,622 - 16262 mRNA_7894 0.59 +1.1
1,320,652 - 16262 mRNA_7894 0.60 -1.0
1,320,668 + 16262 mRNA_7894 0.61 +0.1
1,320,978 + 16262 mRNA_7894 0.71 +4.2
1,321,021 - 16262 mRNA_7894 0.72 +1.0
1,321,036 - 16262 mRNA_7894 0.73 +0.7
1,321,172 + 16262 mRNA_7894 0.77 -0.7
1,321,178 - 16262 mRNA_7894 0.77 -2.4
1,321,193 + 16262 mRNA_7894 0.78 -1.0
1,321,627 + -0.4
1,321,635 - +0.3
1,321,891 - -0.5
1,321,987 + +0.0
1,322,022 - +1.1
1,322,071 + -0.3
1,322,146 + +0.0
1,322,183 - -0.1
1,322,184 + +0.6
1,322,288 - -0.3
1,322,328 - -2.6

Or see this region's nucleotide sequence