Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7896

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16263 and 16264 are separated by 158 nucleotides16264 and 16265 are separated by 351 nucleotides mRNA_7895: 16263 - KOG0027 Calmodulin and related proteins (EF-Hand superfamily), at 1,323,033 to 1,324,122 16263 mRNA_7896: 16264 - K01783 rpe, RPE ribulose-phosphate 3-epimerase, at 1,324,281 to 1,325,324 16264 mRNA_7897: 16265 - K10872 DMC1 meiotic recombination protein DMC1, at 1,325,676 to 1,327,786 16265

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,324,139 - -0.4
1,325,415 + -0.8
1,325,920 - 16265 mRNA_7897 0.12 -1.0
1,326,034 + 16265 mRNA_7897 0.17 +1.8
1,326,046 + 16265 mRNA_7897 0.18 +0.2

Or see this region's nucleotide sequence