Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7900

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16267 and 16268 are separated by 486 nucleotides mRNA_7899: 16267 - K00618 E2.3.1.1 amino-acid N-acetyltransferase, at 1,329,365 to 1,331,583 16267 mRNA_7900: 16268 - Hypothetical Protein, at 1,332,070 to 1,333,846 16268

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,331,457 + -1.6
1,331,536 + -0.8
1,331,540 - -0.8
1,331,556 - +0.2
1,331,567 - -0.2
1,331,585 + -0.8
1,331,735 - -2.6
1,331,742 - +0.7
1,331,770 + +1.4
1,331,776 + +1.0
1,331,821 - +0.7
1,331,835 - +0.7
1,331,849 + +1.0
1,331,854 + +0.4
1,331,862 - +0.7
1,331,880 - +0.5
1,331,897 + +0.8
1,331,906 - +0.1
1,331,913 + +0.6
1,332,015 + +0.9
1,332,177 + +1.8
1,332,197 + +1.6
1,332,599 + 16268 mRNA_7900 0.30 +0.8
1,332,607 + 16268 mRNA_7900 0.30 +0.6
1,332,610 - 16268 mRNA_7900 0.30 -1.0
1,333,284 - 16268 mRNA_7900 0.68 +0.9
1,333,417 - 16268 mRNA_7900 0.76 -0.4
1,333,472 - 16268 mRNA_7900 0.79 +2.0
1,333,782 + +0.4
1,333,882 - -0.2
1,333,887 - +0.9
1,333,917 + +2.0
1,333,918 - +0.9
1,334,028 - -1.1
1,334,029 - +0.1
1,334,037 - -0.9
1,334,049 - +0.3
1,334,066 + -0.2
1,334,079 + -2.7
1,334,120 - -0.7
1,334,130 + +0.8
1,334,177 - -1.0
1,334,177 + -0.0
1,334,181 - +0.5
1,334,198 - -0.4
1,334,199 + -0.2
1,334,210 + +0.4
1,334,213 - +0.1
1,334,215 + -0.1
1,334,223 + -0.6
1,334,228 - +1.8
1,334,242 - -2.0
1,334,247 - -2.1
1,334,250 - -1.3
1,334,254 - +0.6
1,334,255 + +0.2
1,334,256 + -0.4
1,334,269 - +1.4
1,334,301 - +0.1
1,334,315 - +0.3
1,334,319 - +0.2
1,334,320 + -0.5
1,334,325 + +2.7
1,334,335 - -1.0
1,334,336 + +0.4
1,334,481 - -0.9
1,334,481 + +1.4
1,334,487 + +0.5
1,334,595 + +1.0
1,334,747 - -0.3

Or see this region's nucleotide sequence