Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7909

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16276 and 16277 are separated by 135 nucleotides16277 and 16278 are separated by 117 nucleotides mRNA_7908: 16276 - K03783 punA, PNP purine-nucleoside phosphorylase, at 1,357,021 to 1,359,036 16276 mRNA_7909: 16277 - Hypothetical Protein, at 1,359,172 to 1,360,020 16277 mRNA_7910: 16278 - KOG3767 Sideroflexin, at 1,360,138 to 1,362,160 16278

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,358,431 - 16276 mRNA_7908 0.70 +1.0
1,358,557 + 16276 mRNA_7908 0.76 -0.1
1,358,560 - 16276 mRNA_7908 0.76 -0.8
1,358,560 - 16276 mRNA_7908 0.76 +1.7
1,358,674 - 16276 mRNA_7908 0.82 -0.7
1,358,885 - -1.8
1,358,966 - -1.5
1,358,974 + -1.4
1,359,003 - +0.9
1,359,004 - +1.1
1,359,021 + -1.1
1,359,117 - -2.1
1,359,181 + -0.6
1,359,329 + 16277 mRNA_7909 0.18 -1.7
1,359,439 - 16277 mRNA_7909 0.31 -0.8
1,359,474 - 16277 mRNA_7909 0.36 +0.5
1,359,488 - 16277 mRNA_7909 0.37 +1.7
1,359,599 - 16277 mRNA_7909 0.50 -1.5
1,359,664 - 16277 mRNA_7909 0.58 +1.2
1,359,733 - 16277 mRNA_7909 0.66 -0.9
1,359,838 - 16277 mRNA_7909 0.78 +0.4
1,359,845 - 16277 mRNA_7909 0.79 -1.1
1,359,846 - 16277 mRNA_7909 0.79 -1.0
1,359,879 - 16277 mRNA_7909 0.83 -1.6
1,359,879 - 16277 mRNA_7909 0.83 -0.6
1,359,913 - 16277 mRNA_7909 0.87 +0.4
1,360,033 + +0.8
1,360,040 - -0.4
1,360,042 - -0.3
1,360,047 - +0.3
1,360,065 + +2.4
1,360,092 + +0.2
1,360,144 + -0.4
1,360,147 - +0.9
1,360,148 + -2.0
1,360,148 + -0.3
1,360,231 - -1.0
1,360,339 - -1.1
1,360,347 + 16278 mRNA_7910 0.10 -0.1
1,360,375 - 16278 mRNA_7910 0.12 -0.0
1,360,538 + 16278 mRNA_7910 0.20 -0.4
1,360,659 - 16278 mRNA_7910 0.26 -0.6
1,360,705 - 16278 mRNA_7910 0.28 -1.9
1,360,774 - 16278 mRNA_7910 0.31 -0.6
1,360,798 + 16278 mRNA_7910 0.33 -0.0
1,360,888 - 16278 mRNA_7910 0.37 -1.1
1,360,977 - 16278 mRNA_7910 0.41 -0.4

Or see this region's nucleotide sequence