Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7949

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16316 and 16317 are separated by 413 nucleotides16317 and 16318 are separated by 506 nucleotides mRNA_7948: 16316 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 74,444 to 75,195 16316 mRNA_7949: 16317 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 75,609 to 76,482 16317 mRNA_7950: 16318 - K04802 PCNA proliferating cell nuclear antigen, at 76,989 to 79,257 16318

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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74,934 + 16316 mRNA_7948 0.65 +0.0
75,131 - -0.1
75,532 + +2.6
75,573 - -0.4
75,573 - +1.3
75,581 - +0.6
75,591 + +3.7
75,595 + +0.3
75,601 - +1.1
75,601 - +0.2
75,836 + 16317 mRNA_7949 0.26 +0.7
75,850 - 16317 mRNA_7949 0.28 +1.0
75,866 + 16317 mRNA_7949 0.29 +0.2
75,959 - 16317 mRNA_7949 0.40 +0.3
76,096 - 16317 mRNA_7949 0.56 +0.1
76,104 + 16317 mRNA_7949 0.57 -1.5
76,182 + 16317 mRNA_7949 0.66 -0.7
76,241 - 16317 mRNA_7949 0.72 +0.7
76,265 - 16317 mRNA_7949 0.75 -0.6
76,280 - 16317 mRNA_7949 0.77 +1.3
76,590 - +0.1
76,622 - -2.0
76,812 - -1.0
76,915 - -0.4

Or see this region's nucleotide sequence