Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7953

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16321 and 16322 are separated by 544 nucleotides mRNA_7953: 16321 - K13667 RUMI, KTELC1 protein glucosyltransferase, at 85,721 to 88,276 16321 mRNA_7954: 16322 - K01282 E3.4.14.- dipeptidyl aminopeptidase, at 88,821 to 92,965 16322

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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84,860 - -0.3
85,155 - +0.0
85,172 + -0.2
85,284 + +0.5
85,297 + -0.3
85,466 + -2.7
85,614 - +0.5
85,619 - +0.3
85,627 + -1.6
85,652 + +0.4
85,656 + +0.4
85,714 + +0.4
85,777 - +0.5
85,902 + +0.2
85,943 - -0.0
86,322 + 16321 mRNA_7953 0.24 +1.4
86,367 + 16321 mRNA_7953 0.25 -0.3
86,461 - 16321 mRNA_7953 0.29 +2.1
86,466 - 16321 mRNA_7953 0.29 -1.0
86,810 + 16321 mRNA_7953 0.43 +0.1
86,932 - 16321 mRNA_7953 0.47 +0.0
87,119 - 16321 mRNA_7953 0.55 +3.2
87,149 + 16321 mRNA_7953 0.56 -2.1
87,250 + 16321 mRNA_7953 0.60 -0.1
87,265 - 16321 mRNA_7953 0.60 +1.3
87,451 + 16321 mRNA_7953 0.68 -0.3
87,486 - 16321 mRNA_7953 0.69 +0.2
87,524 - 16321 mRNA_7953 0.71 +0.3
87,577 + 16321 mRNA_7953 0.73 +1.2
87,657 + 16321 mRNA_7953 0.76 -0.6
87,693 - 16321 mRNA_7953 0.77 +0.1
87,867 - 16321 mRNA_7953 0.84 -3.2
87,958 - 16321 mRNA_7953 0.88 +0.4
88,107 + -1.2
88,246 - -1.0
88,266 - +0.0
88,389 + -2.1
88,443 - +1.0
88,450 + -0.3
88,471 - -0.0
88,501 + -0.1
88,568 - +0.0
88,591 + -1.7
88,592 + -0.2
88,593 - -0.9
88,593 - +0.0
88,605 + +0.5
88,625 + -0.7
88,639 + -0.9
88,705 - -1.5
88,712 + -2.3
88,781 + -1.9
88,873 + -0.7
88,878 + +0.5
88,880 - -1.3
88,896 + -0.1
88,929 + -1.6
88,930 + -2.3
89,003 + -0.0
89,013 + +1.0
89,040 + +0.8
89,180 - -0.5
89,197 - -2.0

Or see this region's nucleotide sequence