Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7958

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16325 and 16326 are separated by 574 nucleotides16326 and 16327 are separated by 395 nucleotides mRNA_7957: 16325 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 99,297 to 100,218 16325 mRNA_7958: 16326 - Hypothetical Protein, at 100,793 to 101,343 16326 mRNA_7959: 16327 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 101,739 to 102,560 16327

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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99,858 + 16325 mRNA_7957 0.61 -0.0
99,861 - 16325 mRNA_7957 0.61 -0.3
99,873 + 16325 mRNA_7957 0.62 +2.0
100,150 + +0.4
100,305 - +0.7
100,466 + +0.5
100,539 + -1.4
100,541 - +0.5
100,589 + +2.1
100,759 - -1.3
101,390 - -2.4
101,438 - +2.5
101,548 + +0.1
101,595 - +0.1
101,697 + +1.1
101,699 + +1.2
101,707 + +3.4
101,834 + 16327 mRNA_7959 0.12 +0.3
101,905 + 16327 mRNA_7959 0.20 +2.1
101,907 - 16327 mRNA_7959 0.20 +0.4
102,169 - 16327 mRNA_7959 0.52 -0.1

Or see this region's nucleotide sequence