Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7986

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16353 and 16354 are separated by 150 nucleotides16354 and 16355 are separated by 571 nucleotides mRNA_7985: 16353 - K15440 TAD1, ADAT1 tRNA-specific adenosine deaminase 1, at 149,093 to 150,954 16353 mRNA_7986: 16354 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 151,105 to 154,451 16354 mRNA_7987: 16355 - SUPERFAMILY--SSF144232, at 155,023 to 156,185 16355

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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150,121 - 16353 mRNA_7985 0.55 +0.2
150,169 - 16353 mRNA_7985 0.58 +0.8
150,555 - 16353 mRNA_7985 0.79 -0.1
150,972 + +0.2
151,412 - -1.4
151,417 + +0.4
151,461 + 16354 mRNA_7986 0.11 -1.5
151,551 - 16354 mRNA_7986 0.13 +0.0
151,713 + 16354 mRNA_7986 0.18 -1.1
151,749 - 16354 mRNA_7986 0.19 +0.3
151,859 - 16354 mRNA_7986 0.23 +1.4
152,093 - 16354 mRNA_7986 0.30 -1.0
152,188 - 16354 mRNA_7986 0.32 -0.7
152,189 + 16354 mRNA_7986 0.32 +0.4
152,447 - 16354 mRNA_7986 0.40 +0.2
152,542 + 16354 mRNA_7986 0.43 +1.7
152,611 + 16354 mRNA_7986 0.45 -1.4
152,768 - 16354 mRNA_7986 0.50 +0.4
152,791 + 16354 mRNA_7986 0.50 -0.2
152,884 + 16354 mRNA_7986 0.53 +0.5
152,895 - 16354 mRNA_7986 0.53 +0.5
152,898 - 16354 mRNA_7986 0.54 +0.6
152,906 + 16354 mRNA_7986 0.54 +0.8
153,090 + 16354 mRNA_7986 0.59 -0.7
153,172 + 16354 mRNA_7986 0.62 -1.0
153,221 + 16354 mRNA_7986 0.63 -0.9
153,471 + 16354 mRNA_7986 0.71 +0.8
154,054 + 16354 mRNA_7986 0.88 +0.5
154,115 + 16354 mRNA_7986 0.90 -0.4
154,181 - +0.5
154,234 - +1.6
154,330 + +0.5
154,445 - -0.8
154,480 - -0.5
154,493 + +1.4
154,493 + -0.2
154,504 - -0.1
154,690 - +1.0
154,796 - -0.8
154,921 - -0.5
154,933 + +0.2
155,081 - +0.1
155,406 + 16355 mRNA_7987 0.33 -0.9

Or see this region's nucleotide sequence