Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8020

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16387 and 16388 are separated by 183 nucleotides16388 and 16389 are separated by 82 nucleotides mRNA_8019: 16387 - Hypothetical Protein, at 222,905 to 224,449 16387 mRNA_8020: 16388 - K19841 STE50 protein STE50, at 224,633 to 227,369 16388 mRNA_8021: 16389 - HMMPfam-NAD(P)-binding Rossmann-like domain-PF13450,SUPERFAMILY--SSF51905, at 227,452 to 229,516 16389

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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223,681 + 16387 mRNA_8019 0.50 +0.6
223,949 + 16387 mRNA_8019 0.68 -0.5
224,244 - 16387 mRNA_8019 0.87 +1.4
224,337 + -1.3
224,411 - +0.1
224,448 - +1.1
224,617 - -1.1
224,949 + 16388 mRNA_8020 0.12 -2.3
225,429 - 16388 mRNA_8020 0.29 +0.9
226,756 - 16388 mRNA_8020 0.78 +0.8
226,785 + 16388 mRNA_8020 0.79 -3.4
226,926 - 16388 mRNA_8020 0.84 +1.5
227,166 + +0.6
227,373 - +0.5
227,374 - -0.4
227,393 - -1.3
227,808 - 16389 mRNA_8021 0.17 -0.9
227,818 - 16389 mRNA_8021 0.18 +0.2
227,929 - 16389 mRNA_8021 0.23 +0.1
228,336 + 16389 mRNA_8021 0.43 -0.6

Or see this region's nucleotide sequence