Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8076

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16444 and 16445 are separated by 359 nucleotides mRNA_8076: 16444 - Hypothetical Protein, at 368,382 to 369,179 16444 mRNA_8077: 16445 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 369,539 to 370,935 16445

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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367,454 - +1.2
367,462 + +0.2
367,464 - +0.1
367,476 + +0.8
367,489 + -0.7
367,494 - +1.0
367,593 + +3.1
367,599 + -0.2
367,604 - -0.5
367,614 - -1.9
367,621 + -0.1
367,635 + +0.9
367,766 + +0.5
367,768 - -1.6
367,769 + -0.8
367,796 + -0.8
367,810 + +0.1
367,816 + -1.5
367,892 + +0.3
367,893 + -1.3
367,896 - -0.2
367,901 + -0.6
367,920 - +1.2
367,920 + -0.7
367,920 - +1.6
367,923 + -0.7
367,933 - +0.8
367,941 - +0.4
367,953 + +1.7
367,956 + -2.0
367,958 - -0.3
367,972 + +1.2
367,975 - -1.8
367,985 + -0.9
367,989 + -0.2
368,011 + +2.1
368,013 + +0.7
368,014 - -0.4
368,017 - +0.4
368,018 - -0.7
368,021 - -0.9
368,026 - -0.7
368,032 + -0.3
368,040 - -0.6
368,046 + -0.3
368,056 - -0.9
368,057 - -2.1
368,060 + -0.8
368,061 - +0.9
368,064 - -0.3
368,067 - +0.6
368,097 - +1.4
368,111 + -0.1
368,111 + +1.9
368,133 - +2.1
368,135 - -0.1
368,152 - +0.1
368,155 - -1.2
368,156 + -0.2
368,162 - -0.5
368,177 - +0.7
368,184 - +1.0
368,185 - -0.7
368,189 - -1.3
368,195 - -0.4
368,200 - -0.3
368,200 + -0.5
368,209 - -1.0
368,210 + +1.2
368,217 - -0.4
368,217 + -0.8
368,220 - -2.0
368,222 - +0.0
368,236 + -0.5
368,236 - +0.4
368,252 + -0.8
368,255 + +0.6
368,275 - -0.5
368,279 - -0.3
368,280 + -1.0
368,284 + -1.1
368,293 - -0.8
368,324 + -0.5
368,340 - -1.3
368,345 + +0.4
368,345 + -1.5
368,349 - -0.1
368,357 - +0.7
368,361 - -0.9
368,370 + -1.0
368,381 - -1.7
368,397 - +1.9
368,403 - +2.5
368,404 - +1.9
368,416 - +0.9
368,430 - -0.0
368,433 + +1.4
368,436 - +0.7
368,450 - -1.6
368,461 + +0.7
368,473 - 16444 mRNA_8076 0.11 +0.2
368,485 - 16444 mRNA_8076 0.13 +0.3
368,495 - 16444 mRNA_8076 0.14 +1.3
368,500 + 16444 mRNA_8076 0.15 +1.6
368,506 + 16444 mRNA_8076 0.16 -2.6
368,515 + 16444 mRNA_8076 0.17 +0.3
368,528 - 16444 mRNA_8076 0.18 +0.3
368,531 - 16444 mRNA_8076 0.19 +1.8
368,553 + 16444 mRNA_8076 0.21 +1.4
368,564 + 16444 mRNA_8076 0.23 -1.0
368,574 - 16444 mRNA_8076 0.24 -0.1
368,581 + 16444 mRNA_8076 0.25 +0.2
368,584 + 16444 mRNA_8076 0.25 -0.7
368,585 - 16444 mRNA_8076 0.25 -0.2
368,595 - 16444 mRNA_8076 0.27 +2.4
368,596 + 16444 mRNA_8076 0.27 +0.1
368,602 - 16444 mRNA_8076 0.28 -0.7
368,606 - 16444 mRNA_8076 0.28 -2.2
368,607 + 16444 mRNA_8076 0.28 -0.1
368,608 + 16444 mRNA_8076 0.28 -1.5
368,610 - 16444 mRNA_8076 0.29 +0.5
368,611 + 16444 mRNA_8076 0.29 -1.2
368,611 + 16444 mRNA_8076 0.29 +1.1
368,623 + 16444 mRNA_8076 0.30 +0.2
368,624 - 16444 mRNA_8076 0.30 -2.3
368,641 + 16444 mRNA_8076 0.32 -0.2
368,642 - 16444 mRNA_8076 0.33 -0.8
368,642 - 16444 mRNA_8076 0.33 -1.2
368,664 - 16444 mRNA_8076 0.35 +0.3
368,668 + 16444 mRNA_8076 0.36 -0.0
368,678 - 16444 mRNA_8076 0.37 -0.8
368,693 - 16444 mRNA_8076 0.39 +1.0
368,693 + 16444 mRNA_8076 0.39 +1.7
368,696 + 16444 mRNA_8076 0.39 -1.1
368,718 + 16444 mRNA_8076 0.42 -0.9
368,724 - 16444 mRNA_8076 0.43 -1.7
368,727 + 16444 mRNA_8076 0.43 -1.2
368,738 - 16444 mRNA_8076 0.45 -0.4
368,743 + 16444 mRNA_8076 0.45 +0.7
368,744 - 16444 mRNA_8076 0.45 +0.0
368,745 + 16444 mRNA_8076 0.45 -0.6
368,747 - 16444 mRNA_8076 0.46 -1.4
368,747 - 16444 mRNA_8076 0.46 -0.5
368,763 - 16444 mRNA_8076 0.48 -0.4
368,765 + 16444 mRNA_8076 0.48 +0.2
368,766 + 16444 mRNA_8076 0.48 -0.7
368,769 - 16444 mRNA_8076 0.48 -0.1
368,770 - 16444 mRNA_8076 0.49 -0.1
368,774 - 16444 mRNA_8076 0.49 -1.5
368,775 + 16444 mRNA_8076 0.49 -1.3
368,775 + 16444 mRNA_8076 0.49 -0.2
368,775 + 16444 mRNA_8076 0.49 -0.2
368,776 - 16444 mRNA_8076 0.49 -0.8
368,779 - 16444 mRNA_8076 0.50 +0.8
368,786 + 16444 mRNA_8076 0.51 -0.4
368,788 + 16444 mRNA_8076 0.51 -0.6
368,796 + 16444 mRNA_8076 0.52 -1.7
368,796 + 16444 mRNA_8076 0.52 +1.2
368,817 - 16444 mRNA_8076 0.55 -2.5
368,881 + 16444 mRNA_8076 0.63 -1.0
368,912 + 16444 mRNA_8076 0.66 +2.2
368,918 + 16444 mRNA_8076 0.67 +1.0
368,928 + 16444 mRNA_8076 0.68 -0.3
368,932 + 16444 mRNA_8076 0.69 -0.1
368,932 + 16444 mRNA_8076 0.69 -1.8
368,936 - 16444 mRNA_8076 0.69 -1.7
368,938 - 16444 mRNA_8076 0.70 +0.7
368,940 - 16444 mRNA_8076 0.70 +0.2
368,940 - 16444 mRNA_8076 0.70 -0.2
368,943 - 16444 mRNA_8076 0.70 -1.3
368,943 - 16444 mRNA_8076 0.70 +0.6
368,949 - 16444 mRNA_8076 0.71 -2.8
368,949 - 16444 mRNA_8076 0.71 +0.4
368,950 + 16444 mRNA_8076 0.71 -1.4
368,955 + 16444 mRNA_8076 0.72 +0.3
368,956 - 16444 mRNA_8076 0.72 -2.1
368,956 + 16444 mRNA_8076 0.72 -0.2
368,956 + 16444 mRNA_8076 0.72 -1.5
368,958 - 16444 mRNA_8076 0.72 +0.2
368,958 + 16444 mRNA_8076 0.72 -1.5
368,959 + 16444 mRNA_8076 0.72 +0.5
368,961 - 16444 mRNA_8076 0.73 -0.4
368,969 - 16444 mRNA_8076 0.74 -0.2
368,974 + 16444 mRNA_8076 0.74 +0.1
368,979 - 16444 mRNA_8076 0.75 -0.1
368,982 + 16444 mRNA_8076 0.75 -1.1
368,984 + 16444 mRNA_8076 0.75 +0.2
368,988 - 16444 mRNA_8076 0.76 +2.1
368,988 + 16444 mRNA_8076 0.76 -0.2
368,989 - 16444 mRNA_8076 0.76 -0.2
369,001 + 16444 mRNA_8076 0.78 -0.4
369,045 - 16444 mRNA_8076 0.83 -0.5
369,049 + 16444 mRNA_8076 0.84 -0.7
369,058 - 16444 mRNA_8076 0.85 -0.0
369,059 - 16444 mRNA_8076 0.85 -0.4
369,073 + 16444 mRNA_8076 0.87 -1.1
369,075 - 16444 mRNA_8076 0.87 -1.8
369,080 + 16444 mRNA_8076 0.87 +1.0
369,084 + 16444 mRNA_8076 0.88 -0.6
369,110 + +1.0
369,170 - +0.2
369,203 - +0.2
369,207 - -0.2
369,211 + -1.3
369,213 - +1.0
369,242 + +0.3
369,259 + -0.5
369,272 - +0.9
369,286 + -0.5
369,323 + -0.5
369,330 - +1.8
369,331 + -0.4
369,337 - -0.9
369,339 - -1.1
369,343 + +0.3
369,343 - -0.0
369,345 + +0.8
369,348 + +0.1
369,349 + -1.9
369,354 + +1.0
369,354 - +0.8
369,355 - +0.2
369,355 + -0.3
369,359 - +0.1
369,361 + -0.1
369,366 + +0.3
369,366 + +0.6
369,366 + -0.3
369,370 + +2.6
369,370 + -1.0
369,371 - -1.6
369,372 - +1.0
369,372 - -1.5
369,372 + -1.7
369,373 - -2.2
369,373 - -1.5
369,375 - -1.0
369,375 + -0.2
369,376 + +1.0
369,382 + -0.8
369,394 - +0.4
369,407 - -0.7
369,511 + +1.6
369,514 - -0.4
369,514 - -0.0
369,518 - -0.3
369,529 - -1.0
369,534 - +0.5
369,536 - +0.5
369,540 + -1.1
369,547 - -1.2
369,549 + -1.0
369,560 - +1.2
369,561 - +0.6
369,618 - -0.0
369,639 + -1.5
369,684 - 16445 mRNA_8077 0.10 -0.2
369,689 - 16445 mRNA_8077 0.11 +0.3
369,695 + 16445 mRNA_8077 0.11 +0.9
369,709 + 16445 mRNA_8077 0.12 -1.8
369,711 + 16445 mRNA_8077 0.12 +2.6
369,718 - 16445 mRNA_8077 0.13 -1.0
369,731 - 16445 mRNA_8077 0.14 -1.6
369,740 + 16445 mRNA_8077 0.14 -1.1
369,744 - 16445 mRNA_8077 0.15 +1.9
369,745 + 16445 mRNA_8077 0.15 -0.1
369,756 + 16445 mRNA_8077 0.16 +2.3
369,760 + 16445 mRNA_8077 0.16 -0.2
369,768 + 16445 mRNA_8077 0.16 -0.1
369,771 + 16445 mRNA_8077 0.17 -1.1
369,778 - 16445 mRNA_8077 0.17 +0.3
369,780 + 16445 mRNA_8077 0.17 +0.8
369,792 + 16445 mRNA_8077 0.18 +0.5
369,805 - 16445 mRNA_8077 0.19 +0.1
369,822 - 16445 mRNA_8077 0.20 +0.4
369,827 - 16445 mRNA_8077 0.21 -1.0
369,850 + 16445 mRNA_8077 0.22 -0.5
369,850 + 16445 mRNA_8077 0.22 +0.5
369,852 + 16445 mRNA_8077 0.22 +0.4
369,862 + 16445 mRNA_8077 0.23 -0.1
369,863 - 16445 mRNA_8077 0.23 +1.7
369,863 - 16445 mRNA_8077 0.23 -0.2
369,863 - 16445 mRNA_8077 0.23 +0.2
369,863 - 16445 mRNA_8077 0.23 +0.3
369,864 + 16445 mRNA_8077 0.23 -0.0
369,866 + 16445 mRNA_8077 0.23 -0.6
369,868 - 16445 mRNA_8077 0.24 -0.5
369,891 - 16445 mRNA_8077 0.25 -1.1
369,919 + 16445 mRNA_8077 0.27 +0.2
369,929 - 16445 mRNA_8077 0.28 +0.6
369,956 + 16445 mRNA_8077 0.30 -0.2
369,966 + 16445 mRNA_8077 0.31 +1.9
369,979 - 16445 mRNA_8077 0.31 -1.0
369,990 - 16445 mRNA_8077 0.32 -1.2
369,996 + 16445 mRNA_8077 0.33 +1.6
370,020 + 16445 mRNA_8077 0.34 -0.3
370,030 - 16445 mRNA_8077 0.35 -0.6
370,032 - 16445 mRNA_8077 0.35 -0.7
370,047 - 16445 mRNA_8077 0.36 +0.2
370,048 + 16445 mRNA_8077 0.36 -0.9
370,055 - 16445 mRNA_8077 0.37 -1.3
370,056 - 16445 mRNA_8077 0.37 +1.3
370,057 + 16445 mRNA_8077 0.37 -0.7
370,071 - 16445 mRNA_8077 0.38 +1.0
370,073 - 16445 mRNA_8077 0.38 +0.2
370,091 - 16445 mRNA_8077 0.40 -0.4
370,094 + 16445 mRNA_8077 0.40 +0.2
370,096 - 16445 mRNA_8077 0.40 -0.7
370,101 + 16445 mRNA_8077 0.40 -1.3
370,102 - 16445 mRNA_8077 0.40 -0.8
370,109 - 16445 mRNA_8077 0.41 +0.3
370,110 + 16445 mRNA_8077 0.41 -0.8
370,118 + 16445 mRNA_8077 0.41 -1.3
370,138 + 16445 mRNA_8077 0.43 +1.2
370,141 + 16445 mRNA_8077 0.43 -0.6
370,146 - 16445 mRNA_8077 0.43 -0.4
370,156 - 16445 mRNA_8077 0.44 -1.1
370,163 - 16445 mRNA_8077 0.45 -0.1

Or see this region's nucleotide sequence