Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8096

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16463 and 16464 are separated by 467 nucleotides16464 and 16465 are separated by 333 nucleotides mRNA_8095: 16463 - K17508 PTC7, PPTC7 protein phosphatase PTC7, at 406,311 to 408,343 16463 mRNA_8096: 16464 - K13338 PEX1 peroxin-1, at 408,811 to 412,943 16464 mRNA_8097: 16465 - KOG0118 FOG RRM domain, at 413,277 to 414,722 16465

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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407,816 - 16463 mRNA_8095 0.74 +2.0
407,836 - 16463 mRNA_8095 0.75 +0.3
407,839 - 16463 mRNA_8095 0.75 +0.9
407,893 - 16463 mRNA_8095 0.78 -1.3
407,954 - 16463 mRNA_8095 0.81 -3.2
408,012 + 16463 mRNA_8095 0.84 +0.6
408,126 + 16463 mRNA_8095 0.89 -0.1
408,243 - -0.0
408,249 - +0.3
408,274 - -0.3
408,308 + +0.2
408,421 + -1.0
408,424 - -0.0
408,434 + +0.3
408,434 + -1.4
408,473 + -0.1
408,562 - -2.0
408,567 + +1.0
408,581 - -0.2
408,584 + -0.9
408,587 + +0.6
408,588 + +1.9
408,602 + -1.2
408,851 - +0.6
408,888 + -1.5
412,931 + -1.2
412,953 - -1.4
412,967 + -0.1
412,968 + -0.8
412,970 - +0.1
412,972 + -0.4
412,974 - -0.9
412,980 + +1.0
412,982 + -1.1
413,023 + -0.1
413,053 - +0.1
413,079 - +2.7
413,081 - -0.2
413,164 - -1.6
413,194 - -0.0
413,200 + +1.0
413,320 - +0.5

Or see this region's nucleotide sequence