Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8102

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16469 and 16470 are separated by 326 nucleotides16470 and 16471 are separated by 607 nucleotides mRNA_8101: 16469 - Hypothetical Protein, at 419,844 to 420,309 16469 mRNA_8102: 16470 - Hypothetical Protein, at 420,636 to 421,256 16470 mRNA_8103: 16471 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 421,864 to 423,445 16471

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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420,105 - 16469 mRNA_8101 0.56 +0.8
420,108 - 16469 mRNA_8101 0.57 +0.2
420,126 - 16469 mRNA_8101 0.61 -0.7
420,274 - +1.8
420,390 - +1.1
420,393 + +0.9
420,404 - -1.3
420,432 + +0.4
420,437 - -0.9
420,708 - 16470 mRNA_8102 0.12 +0.6
420,866 - 16470 mRNA_8102 0.37 -0.4
421,191 + 16470 mRNA_8102 0.89 -0.0
421,327 + -0.8
421,593 + -1.1
421,597 - -0.9
421,598 + -1.5
421,607 - -0.5
421,630 + +1.5
421,630 - -0.7
421,762 - +0.1
421,769 - -0.3
421,883 - +1.5
421,886 - -2.5
421,905 - -0.9
422,026 - 16471 mRNA_8103 0.10 -2.4
422,190 - 16471 mRNA_8103 0.21 +0.0

Or see this region's nucleotide sequence