Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8160

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16527 and 16528 are separated by 134 nucleotides16528 and 16529 are separated by 179 nucleotides mRNA_8159: 16527 - K17607 TIPRL, TIP41 type 2A phosphatase activator TIP41, at 553,684 to 555,009 16527 mRNA_8160: 16528 - K01873 VARS, valS valyl-tRNA synthetase, at 555,144 to 559,347 16528 mRNA_8161: 16529 - BLAST Actin cytoskeleton-regulatory complex protein pan1 [R..., at 559,527 to 560,747 16529

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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554,157 + 16527 mRNA_8159 0.36 -0.8
554,277 + 16527 mRNA_8159 0.45 -0.7
554,449 + 16527 mRNA_8159 0.58 +0.5
555,018 + +0.5
557,701 - 16528 mRNA_8160 0.61 +1.2
559,396 - -0.3
559,433 + -0.1
559,438 + -0.0
559,564 - +1.7
559,573 - +2.3
559,619 + +0.1
559,649 - 16529 mRNA_8161 0.10 +0.2
559,650 - 16529 mRNA_8161 0.10 +0.1
559,718 + 16529 mRNA_8161 0.16 +0.2
559,735 - 16529 mRNA_8161 0.17 -0.5
559,740 + 16529 mRNA_8161 0.17 +0.0
559,890 - 16529 mRNA_8161 0.30 -1.9
559,975 + 16529 mRNA_8161 0.37 -1.6
560,169 - 16529 mRNA_8161 0.53 +1.9
560,257 - 16529 mRNA_8161 0.60 +1.1

Or see this region's nucleotide sequence