Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8166

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16533 and 16534 are separated by 309 nucleotides16534 and 16535 are separated by 168 nucleotides mRNA_8165: 16533 - HMMPfam-Saccharopine dehydrogenase-PF03435,SUPERFAMILY--SSF51735, at 569,404 to 570,854 16533 mRNA_8166: 16534 - BLAST receptor-activated Ca2+-permeable cation channel [Aur..., at 571,164 to 574,503 16534 mRNA_8167: 16535 - K04350 RASGRP1 RAS guanyl-releasing protein 1, at 574,672 to 578,875 16535

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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570,181 - 16533 mRNA_8165 0.54 +0.3
570,218 - 16533 mRNA_8165 0.56 -0.5
570,507 - 16533 mRNA_8165 0.76 -1.9
570,640 - 16533 mRNA_8165 0.85 +2.4
571,045 - +1.1
571,050 + -0.6
571,072 + -0.8
571,202 - -0.3
571,359 - +2.4
571,370 - -0.4
571,372 - +1.4
571,386 + -0.5
571,513 - 16534 mRNA_8166 0.10 -0.3
571,514 + 16534 mRNA_8166 0.10 -0.7
571,570 + 16534 mRNA_8166 0.12 +2.7
572,091 - 16534 mRNA_8166 0.28 -0.3
572,547 + 16534 mRNA_8166 0.41 +1.5
573,009 + 16534 mRNA_8166 0.55 +0.6
573,091 + 16534 mRNA_8166 0.58 -1.2
573,114 - 16534 mRNA_8166 0.58 +0.5
573,447 + 16534 mRNA_8166 0.68 +1.3
573,463 + 16534 mRNA_8166 0.69 -0.1
573,793 - 16534 mRNA_8166 0.79 +0.0
573,943 + 16534 mRNA_8166 0.83 +0.3
574,588 + +0.5
574,592 + +1.3
574,700 - +0.6
574,817 - -0.8
574,887 + -1.3
575,030 + -0.5
575,205 - 16535 mRNA_8167 0.13 -0.3
575,259 - 16535 mRNA_8167 0.14 -0.6
575,470 + 16535 mRNA_8167 0.19 -0.1

Or see this region's nucleotide sequence