Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8172

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16540 and 16541 are separated by 237 nucleotides mRNA_8172: 16540 - K17592 SACS sacsin, at 590,465 to 596,519 16540 mRNA_8173: 16541 - HMMPfam-Glutathione-dependent formaldehyde-activating enzyme-PF04828,SUPERFAMILY--SSF51316, at 596,757 to 597,514 16541

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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589,652 + -2.3
589,692 + -1.1
589,835 + -0.6
589,987 - -1.1
590,106 - -0.7
590,112 - -0.9
590,123 + -0.6
590,256 + +0.6
590,258 - -1.5
590,268 + -2.6
590,270 + +1.8
590,294 - +0.5
590,427 + -0.1
590,452 - -0.5
590,594 - -0.3
590,790 - -1.6
591,057 + -0.1
591,306 - 16540 mRNA_8172 0.14 +0.3
591,315 + 16540 mRNA_8172 0.14 -0.2
591,486 + 16540 mRNA_8172 0.17 -2.2
591,592 - 16540 mRNA_8172 0.19 +1.1
591,754 - 16540 mRNA_8172 0.21 -0.3
592,493 + 16540 mRNA_8172 0.33 +0.5
592,836 + 16540 mRNA_8172 0.39 +0.0
592,917 - 16540 mRNA_8172 0.40 +0.3
593,098 - 16540 mRNA_8172 0.43 +0.9
593,885 - 16540 mRNA_8172 0.56 -1.5
594,434 + 16540 mRNA_8172 0.66 +1.2
594,441 + 16540 mRNA_8172 0.66 +1.3
594,453 + 16540 mRNA_8172 0.66 -0.5
595,137 + 16540 mRNA_8172 0.77 +1.3
595,285 - 16540 mRNA_8172 0.80 +0.1
595,676 - 16540 mRNA_8172 0.86 +0.5
595,787 - 16540 mRNA_8172 0.88 +1.3
595,921 - -3.8
596,404 - +0.8
596,532 + +0.7
596,941 + 16541 mRNA_8173 0.24 -0.0

Or see this region's nucleotide sequence