Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8179

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16547 and 16548 are separated by 225 nucleotides mRNA_8179: 16547 - K20705 DNMBP, ARHGEF36, TUBA dynamin-binding protein, at 608,885 to 612,908 16547 mRNA_8180: 16548 - K13127 RNF113A, CWC24 RING finger protein 113A, at 613,134 to 614,430 16548

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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607,911 - +1.4
607,943 + -0.7
607,947 - -0.8
607,947 + +0.6
607,956 - -1.3
607,957 + +1.9
607,968 - -0.5
607,969 - +2.4
607,976 + +1.6
607,985 - -0.1
608,012 - +1.0
608,026 - +0.1
608,034 - +0.3
608,069 + +2.8
608,071 - -1.1
608,073 - +0.3
608,081 + +1.8
608,082 + -3.0
608,083 + +2.7
608,086 - -0.2
608,086 + +1.2
608,087 - +0.6
608,089 + +2.4
608,091 - +0.0
608,096 + -0.2
608,099 - +0.8
608,101 + -0.7
608,103 + -0.1
608,112 - -0.1
608,112 - -0.3
608,117 + +1.1
608,120 + +0.7
608,128 - +0.2
608,145 + -0.5
608,158 + -0.5
608,158 + +0.8
608,161 - -2.1
608,161 + +3.1
608,162 + +2.1
608,182 + +0.1
608,182 + -0.5
608,186 + -0.2
608,186 + +0.7
608,187 - +0.1
608,191 - -0.3
608,193 - +1.0
608,197 - +1.4
608,198 + +0.7
608,202 + -0.1
608,208 - +0.4
608,209 + -0.6
608,209 + -0.1
608,209 + -1.0
608,219 - +2.0
608,222 + -0.2
608,223 + -0.9
608,229 - -1.9
608,231 + +0.5
608,239 - +4.1
608,244 + -0.7
608,245 - +1.2
608,246 + -0.1
608,246 - +1.9
608,246 + -0.9
608,247 + -0.3
608,251 - -0.5
608,256 + +0.0
608,257 - +1.2
608,257 - -0.2
608,262 - -1.5
608,263 + +1.0
608,264 - +0.7
608,266 + +0.2
608,268 + -1.7
608,268 + -0.1
608,271 - +1.2
608,275 + +0.8
608,284 + -0.1
608,287 + +3.4
608,294 + +0.6
608,294 + -1.8
608,317 + +1.4
608,333 - +0.5
608,335 + -1.6
608,345 - -0.0
608,349 - +0.3
608,353 - -0.7
608,359 - +0.0
608,366 - +0.7
608,371 - +1.4
608,375 - +0.3
608,378 + +0.2
608,381 - +1.2
608,382 - -1.5
608,382 - -3.1
608,391 + +0.1
608,392 + +0.0
608,400 + +0.1
608,416 - -0.5
608,548 - -0.8
608,678 - -0.1
608,699 - +0.3
608,713 + -0.7
608,713 + -0.4
608,717 - +0.4
608,721 + +0.1
608,731 - -0.3
608,835 - -2.3
608,840 - +1.7
609,042 + +0.7
609,107 + -0.4
609,114 - -0.2
609,126 + +2.3
609,143 + -0.9
609,150 + -0.1
609,270 - +0.7
609,277 + -0.2
609,284 + +0.5
609,848 - 16547 mRNA_8179 0.24 -2.7
610,168 + 16547 mRNA_8179 0.32 -1.5
610,336 - 16547 mRNA_8179 0.36 -1.0
611,053 + 16547 mRNA_8179 0.54 -0.4
611,075 - 16547 mRNA_8179 0.54 +0.9
611,083 + 16547 mRNA_8179 0.55 -0.3
611,175 + 16547 mRNA_8179 0.57 +2.1
611,188 - 16547 mRNA_8179 0.57 -0.4
611,729 + 16547 mRNA_8179 0.71 -1.6
611,764 + 16547 mRNA_8179 0.72 -0.0
611,944 + 16547 mRNA_8179 0.76 +0.2
612,061 + 16547 mRNA_8179 0.79 -0.7
612,942 - -0.0
613,077 + +1.2
613,079 - -0.4

Or see this region's nucleotide sequence