Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8198

Experiment: 40 hrs High Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16565 and 16566 are separated by 226 nucleotides16566 and 16567 are separated by 101 nucleotides mRNA_8197: 16565 - KOG2922 Uncharacterized conserved protein, at 652,238 to 654,491 16565 mRNA_8198: 16566 - K03190 ureD, ureH urease accessory protein, at 654,718 to 655,775 16566 mRNA_8199: 16567 - Hypothetical Protein, at 655,877 to 657,716 16567

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
remove
653,870 + 16565 mRNA_8197 0.72 +0.7
654,270 - +0.8
654,283 - -2.3
654,573 - +1.4
654,578 + +0.6
654,578 + -0.7
654,726 + +0.4
654,737 - +1.1
654,743 - +0.9
654,745 + +1.2
655,018 + 16566 mRNA_8198 0.28 -2.6
655,024 - 16566 mRNA_8198 0.29 +0.4
655,181 - 16566 mRNA_8198 0.44 -0.8
655,603 + 16566 mRNA_8198 0.84 +0.1
655,738 + +0.0
655,888 - -2.8
656,038 + -1.6
656,066 + 16567 mRNA_8199 0.10 -2.3
656,074 - 16567 mRNA_8199 0.11 -1.2

Or see this region's nucleotide sequence