Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8233

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16600 and 16601 are separated by 205 nucleotides16601 and 16602 are separated by 225 nucleotides mRNA_8232: 16600 - K12623 LSM4 U6 snRNA-associated Sm-like protein LSm4, at 727,305 to 728,231 16600 mRNA_8233: 16601 - K13113 UBL5, HUB1 ubiquitin-like protein 5, at 728,437 to 729,216 16601 mRNA_8234: 16602 - KOG3702 Nuclear polyadenylated RNA binding protein, at 729,442 to 731,463 16602

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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727,522 + 16600 mRNA_8232 0.23 +0.7
727,530 - 16600 mRNA_8232 0.24 +1.0
728,284 + +0.6
729,266 - -0.1
729,288 + -1.4
729,419 + -2.0
729,755 + 16602 mRNA_8234 0.15 +1.2

Or see this region's nucleotide sequence