Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8271

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16638 and 16639 are separated by 390 nucleotides16639 and 16640 are separated by 338 nucleotides mRNA_8270: 16638 - Hypothetical Protein, at 812,469 to 813,656 16638 mRNA_8271: 16639 - K14397 NUDT21, CPSF5, CFIM25 cleavage and polyadenylation specificity factor subunit 5, at 814,047 to 815,109 16639 mRNA_8272: 16640 - K07750 E1.14.13.72, SC4MOL, ERG25 methylsterol monooxygenase, at 815,448 to 817,149 16640

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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813,155 + 16638 mRNA_8270 0.58 +0.9
813,173 + 16638 mRNA_8270 0.59 +0.6
813,226 + 16638 mRNA_8270 0.64 +3.0
813,282 + 16638 mRNA_8270 0.68 +0.3
813,592 + +0.6
813,682 + +3.8
813,728 + +0.5
813,866 - +1.1
813,874 + -0.7
813,874 + -1.1
814,025 - -0.3
814,032 - -1.0
814,038 + +2.6
814,050 - +1.0
814,144 - +0.8
814,156 - 16639 mRNA_8271 0.10 +0.5
814,289 - 16639 mRNA_8271 0.23 -0.3
814,311 - 16639 mRNA_8271 0.25 +0.9
814,316 + 16639 mRNA_8271 0.25 -0.7
814,317 - 16639 mRNA_8271 0.25 -1.2
814,318 - 16639 mRNA_8271 0.25 +0.0
814,609 - 16639 mRNA_8271 0.53 -0.9
814,625 - 16639 mRNA_8271 0.54 -0.6
814,631 + 16639 mRNA_8271 0.55 -0.2
814,636 + 16639 mRNA_8271 0.55 +0.6
814,713 - 16639 mRNA_8271 0.63 +1.7
814,728 - 16639 mRNA_8271 0.64 +1.0
814,731 - 16639 mRNA_8271 0.64 +2.1
814,780 + 16639 mRNA_8271 0.69 +0.4
814,857 + 16639 mRNA_8271 0.76 +0.8
814,871 + 16639 mRNA_8271 0.78 +0.1
814,873 + 16639 mRNA_8271 0.78 -0.5
814,875 + 16639 mRNA_8271 0.78 +0.2
814,895 - 16639 mRNA_8271 0.80 -0.4
814,897 - 16639 mRNA_8271 0.80 +0.6
814,898 + 16639 mRNA_8271 0.80 +1.1
814,901 + 16639 mRNA_8271 0.80 +0.2
814,901 + 16639 mRNA_8271 0.80 +0.1
814,919 - 16639 mRNA_8271 0.82 -0.5
814,984 + 16639 mRNA_8271 0.88 +2.5
815,014 - -0.9
815,018 - +1.6
815,020 - -0.7
815,047 - +0.6
815,047 + +1.4
815,049 - +0.4
815,055 + -0.1
815,061 + -0.4
815,064 + -1.0
815,076 + +0.1
815,145 - -0.9
815,149 - +0.7
815,153 - +0.8
815,155 - -0.5
815,166 - -2.0
815,168 + -0.3
815,170 - +0.4
815,178 - +1.4
815,189 + -1.0
815,198 - -1.7
815,200 - -0.3
815,201 + -0.4
815,214 - -0.1
815,214 - -1.7
815,217 + -0.9
815,218 - +1.9
815,220 - -0.3
815,221 - -1.2
815,223 + +1.8
815,225 - +2.2
815,292 - +1.2
815,310 - -0.0
815,322 - -0.4
815,350 - +0.6
815,351 - -1.4
815,354 - -2.9
815,364 - -1.8

Or see this region's nucleotide sequence