Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8288

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16655 and 16656 are separated by 569 nucleotides mRNA_8287: 16655 - K10245 ELO2 fatty acid elongase 2, at 850,853 to 852,932 16655 mRNA_8288: 16656 - KOG4135 Predicted phosphoglucosamine acetyltransferase, at 853,502 to 854,309 16656

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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853,395 + +1.1
853,710 + 16656 mRNA_8288 0.26 -0.1
853,762 + 16656 mRNA_8288 0.32 -0.5
854,023 - 16656 mRNA_8288 0.64 -0.5
854,061 + 16656 mRNA_8288 0.69 +0.8
854,061 + 16656 mRNA_8288 0.69 +2.2
854,169 - 16656 mRNA_8288 0.83 +0.8
854,173 + 16656 mRNA_8288 0.83 +0.9
854,201 + 16656 mRNA_8288 0.87 -2.8
854,335 + +0.2
854,344 + +0.8
854,372 + +0.3
854,384 + +0.9
854,502 + -3.0
854,528 + +2.6
854,553 + +0.3
854,564 - -1.2
854,565 - -0.6
854,569 + -0.1
854,571 + +1.3
854,573 + +0.4
854,575 - +0.0
854,717 - +4.1
854,730 - -0.2
854,741 + +3.6
854,883 + +0.7
855,028 + +0.4

Or see this region's nucleotide sequence