Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8339

Experiment: 40 hrs High Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16707 and 16708 are separated by 115 nucleotides mRNA_8339: 16707 - K06180 rluD 23S rRNA pseudouridine1911/1915/1917 synthase, at 972,438 to 973,571 16707 mRNA_8340: 16708 - K03254 EIF3A translation initiation factor 3 subunit A, at 973,687 to 977,357 16708

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
remove
971,660 - +0.1
971,671 + -1.2
971,943 - +0.7
972,119 + -1.0
972,192 - +0.3
972,205 + +1.0
972,232 - +0.1
972,252 - -0.3
972,283 - +0.9
972,296 + -0.5
972,371 + -0.6
972,384 - +0.4
972,568 + 16707 mRNA_8339 0.11 +1.0
972,684 + 16707 mRNA_8339 0.22 +0.4
972,711 + 16707 mRNA_8339 0.24 +0.2
972,715 + 16707 mRNA_8339 0.24 +1.9
972,717 + 16707 mRNA_8339 0.25 +1.0
972,719 + 16707 mRNA_8339 0.25 +0.2
972,725 + 16707 mRNA_8339 0.25 +2.3
972,838 + 16707 mRNA_8339 0.35 -0.6
972,891 + 16707 mRNA_8339 0.40 -0.9
973,193 + 16707 mRNA_8339 0.67 +0.6
973,194 - 16707 mRNA_8339 0.67 +1.8
973,195 - 16707 mRNA_8339 0.67 +0.6
973,461 - -0.5
973,461 - -0.6
973,489 + -1.1
973,620 - -0.1
973,626 + -0.8
973,635 + -0.0
973,638 - +1.3
973,640 + -3.4
973,648 + -0.0
973,653 - -1.2
973,658 + -0.5

Or see this region's nucleotide sequence