Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8352

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16719 and 16720 are separated by 967 nucleotides16720 and 16721 are separated by 705 nucleotides mRNA_8351: 16719 - K14303 NUP160, NUP120 nuclear pore complex protein Nup160, at 1,006,818 to 1,012,012 16719 mRNA_8352: 16720 - Hypothetical Protein, at 1,012,980 to 1,013,679 16720 mRNA_8353: 16721 - BLAST Clampless protein 1 [Leucoagaricus sp. SymC.cos], at 1,014,385 to 1,015,330 16721

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,011,993 + -1.2
1,011,998 - -2.5
1,012,004 + +0.3
1,012,274 + -1.5
1,012,614 - +1.5
1,012,872 - +0.0
1,012,893 - +1.7
1,013,199 + 16720 mRNA_8352 0.31 -0.6
1,013,200 + 16720 mRNA_8352 0.31 +0.4
1,013,200 + 16720 mRNA_8352 0.31 +0.8
1,013,214 - 16720 mRNA_8352 0.33 +0.1
1,013,319 - 16720 mRNA_8352 0.48 -1.5
1,013,323 - 16720 mRNA_8352 0.49 -1.3
1,013,327 - 16720 mRNA_8352 0.50 -0.7
1,013,330 + 16720 mRNA_8352 0.50 -1.2
1,013,333 - 16720 mRNA_8352 0.50 -0.4
1,013,336 + 16720 mRNA_8352 0.51 -0.1
1,013,339 + 16720 mRNA_8352 0.51 +2.7
1,013,341 - 16720 mRNA_8352 0.52 +0.5
1,013,344 + 16720 mRNA_8352 0.52 -0.4
1,013,352 - 16720 mRNA_8352 0.53 +0.2
1,013,361 - 16720 mRNA_8352 0.54 +2.0
1,013,369 - 16720 mRNA_8352 0.56 -0.1
1,013,370 + 16720 mRNA_8352 0.56 +0.0
1,013,498 + 16720 mRNA_8352 0.74 -0.2
1,013,500 - 16720 mRNA_8352 0.74 -0.1
1,013,502 + 16720 mRNA_8352 0.75 +0.8
1,013,581 + 16720 mRNA_8352 0.86 -0.5
1,013,967 - +0.9
1,013,985 - -0.3
1,014,108 + -0.1
1,014,113 - -1.0
1,014,116 + -0.0
1,014,126 - -1.0
1,014,129 + +1.9
1,014,234 + +0.0
1,014,303 - -0.9

Or see this region's nucleotide sequence