Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8369

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16736 and 16737 are separated by 122 nucleotides16737 and 16738 are separated by 423 nucleotides mRNA_8368: 16736 - K07119 K07119 uncharacterized protein, at 1,048,733 to 1,050,184 16736 mRNA_8369: 16737 - HMMPfam-Transient receptor potential (TRP) ion channel-PF06011, at 1,050,307 to 1,054,065 16737 mRNA_8370: 16738 - K12525 metL bifunctional aspartokinase / homoserine dehydrogenase 2, at 1,054,489 to 1,055,817 16738

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,049,357 - 16736 mRNA_8368 0.43 +1.7
1,049,458 - 16736 mRNA_8368 0.50 -1.5
1,049,765 + 16736 mRNA_8368 0.71 -0.6
1,049,779 + 16736 mRNA_8368 0.72 -1.0
1,050,154 - +1.4
1,050,156 + -0.5
1,050,605 - -0.3
1,051,290 + 16737 mRNA_8369 0.26 +1.1
1,051,313 - 16737 mRNA_8369 0.27 -0.2
1,051,799 + 16737 mRNA_8369 0.40 +1.7
1,051,892 + 16737 mRNA_8369 0.42 -1.1
1,052,066 - 16737 mRNA_8369 0.47 +0.8
1,052,421 + 16737 mRNA_8369 0.56 +0.0
1,052,432 + 16737 mRNA_8369 0.57 +1.3
1,052,646 - 16737 mRNA_8369 0.62 +1.1
1,052,949 - 16737 mRNA_8369 0.70 +1.0
1,053,072 - 16737 mRNA_8369 0.74 +0.1
1,053,389 - 16737 mRNA_8369 0.82 +1.6
1,053,390 + 16737 mRNA_8369 0.82 +0.7
1,053,710 + +0.6
1,053,722 + -0.0
1,054,153 - +0.9
1,054,158 - +1.1
1,054,162 + -3.2
1,054,178 - +0.2
1,054,294 + +0.3
1,054,300 + +0.4
1,054,610 - -3.0
1,054,648 - 16738 mRNA_8370 0.12 -1.0

Or see this region's nucleotide sequence