Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8388

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16755 and 16756 are separated by 108 nucleotides mRNA_8387: 16755 - Hypothetical Protein, at 1,092,963 to 1,094,682 16755 mRNA_8388: 16756 - Hypothetical Protein, at 1,094,791 to 1,097,376 16756

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,093,818 + 16755 mRNA_8387 0.50 +0.3
1,093,889 - 16755 mRNA_8387 0.54 -0.3
1,093,893 - 16755 mRNA_8387 0.54 -0.6
1,093,900 - 16755 mRNA_8387 0.54 -0.9
1,093,915 - 16755 mRNA_8387 0.55 +0.9
1,093,931 - 16755 mRNA_8387 0.56 +0.1
1,093,931 - 16755 mRNA_8387 0.56 -1.7
1,093,934 - 16755 mRNA_8387 0.56 +1.2
1,094,044 - 16755 mRNA_8387 0.63 -1.3
1,094,050 - 16755 mRNA_8387 0.63 -0.3
1,094,069 + 16755 mRNA_8387 0.64 -0.9
1,094,079 - 16755 mRNA_8387 0.65 -0.1
1,094,163 - 16755 mRNA_8387 0.70 -0.3
1,094,235 - 16755 mRNA_8387 0.74 +0.5
1,094,258 - 16755 mRNA_8387 0.75 +2.3
1,094,398 + 16755 mRNA_8387 0.83 +1.4
1,094,412 - 16755 mRNA_8387 0.84 +0.3
1,094,477 - 16755 mRNA_8387 0.88 +0.5
1,094,659 + +0.5
1,094,804 + +0.0
1,095,082 - 16756 mRNA_8388 0.11 -1.1
1,095,087 + 16756 mRNA_8388 0.11 +0.8
1,095,090 - 16756 mRNA_8388 0.12 -1.2
1,095,108 + 16756 mRNA_8388 0.12 -1.7
1,095,212 - 16756 mRNA_8388 0.16 +0.9
1,095,242 + 16756 mRNA_8388 0.17 -1.7
1,095,348 + 16756 mRNA_8388 0.22 +0.1
1,095,401 - 16756 mRNA_8388 0.24 +2.3
1,095,408 + 16756 mRNA_8388 0.24 -0.3
1,095,408 + 16756 mRNA_8388 0.24 -0.5
1,095,420 - 16756 mRNA_8388 0.24 +0.8
1,095,423 + 16756 mRNA_8388 0.24 -0.1
1,095,436 + 16756 mRNA_8388 0.25 +0.2
1,095,529 - 16756 mRNA_8388 0.29 +2.0
1,095,598 - 16756 mRNA_8388 0.31 +0.0
1,095,672 + 16756 mRNA_8388 0.34 -0.6
1,095,782 - 16756 mRNA_8388 0.38 +0.1
1,095,988 + 16756 mRNA_8388 0.46 -0.6
1,096,320 + 16756 mRNA_8388 0.59 +0.1
1,096,416 + 16756 mRNA_8388 0.63 -0.3
1,096,549 + 16756 mRNA_8388 0.68 -1.5
1,096,758 - 16756 mRNA_8388 0.76 +0.7
1,097,138 - -0.4
1,097,152 + -1.3
1,097,310 + +0.5
1,097,346 + -0.8
1,097,443 + +0.8
1,097,462 - -0.9
1,097,567 - +0.5
1,097,605 - -0.0
1,097,727 + -0.1
1,097,757 + -0.0
1,097,757 - +0.8
1,097,897 + +0.1
1,097,996 + -0.2
1,098,052 - -0.9
1,098,337 + +1.4

Or see this region's nucleotide sequence