Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8419

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16786 and 16787 are separated by 734 nucleotides16787 and 16788 are separated by 125 nucleotides mRNA_8418: 16786 - HMMPfam-Cgr1 family-PF03879, at 1,174,029 to 1,174,652 16786 mRNA_8419: 16787 - K14310 NUP205, NUP192 nuclear pore complex protein Nup205, at 1,175,387 to 1,181,685 16787 mRNA_8420: 16788 - SUPERFAMILY--SSF52047, at 1,181,811 to 1,183,583 16788

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,174,816 + -0.1
1,174,869 + -0.4
1,174,881 - +0.5
1,174,924 - -2.1
1,175,018 - +0.3
1,175,034 + +0.9
1,175,786 - -0.3
1,180,070 + 16787 mRNA_8419 0.74 -0.8
1,182,043 + 16788 mRNA_8420 0.13 +0.5
1,182,054 + 16788 mRNA_8420 0.14 -1.4
1,182,077 - 16788 mRNA_8420 0.15 -0.9
1,182,155 - 16788 mRNA_8420 0.19 +0.1
1,182,218 - 16788 mRNA_8420 0.23 +0.2
1,182,371 + 16788 mRNA_8420 0.32 +0.5
1,182,562 - 16788 mRNA_8420 0.42 -3.0
1,182,607 + 16788 mRNA_8420 0.45 -0.6
1,182,630 - 16788 mRNA_8420 0.46 +0.3

Or see this region's nucleotide sequence