Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8427

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16794 and 16795 are separated by 576 nucleotides16795 and 16796 are separated by 48 nucleotides16796 and 16797 are separated by 180 nucleotides mRNA_8426: 16794 - Hypothetical Protein, at 1,201,802 to 1,203,211 16794 mRNA_8427: 16795 - K11462 EED polycomb protein EED, at 1,203,788 to 1,206,558 16795 mRNA_8428: 16796 - KOG3808 Uncharacterized conserved protein, at 1,206,607 to 1,207,294 16796 mRNA_8429: 16797 - Hypothetical Protein, at 1,207,475 to 1,209,032 16797

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,202,815 - 16794 mRNA_8426 0.72 -2.0
1,203,166 - -1.3
1,203,172 + +0.5
1,203,203 + +0.2
1,203,261 - +0.3
1,203,342 + -1.7
1,203,343 + -0.1
1,203,413 - -2.8
1,203,414 + -0.1
1,203,417 - -0.0
1,203,449 - +0.4
1,203,473 + -0.7
1,203,653 - -0.3
1,203,654 - -1.1
1,203,746 - +0.2
1,203,765 - +0.7
1,203,766 + -0.4
1,204,049 - -0.7
1,204,075 + 16795 mRNA_8427 0.10 +2.1
1,204,160 - 16795 mRNA_8427 0.13 +0.8
1,204,167 + 16795 mRNA_8427 0.14 +0.0
1,204,360 + 16795 mRNA_8427 0.21 -1.3
1,204,421 + 16795 mRNA_8427 0.23 +0.3
1,204,818 - 16795 mRNA_8427 0.37 -0.2
1,204,926 + 16795 mRNA_8427 0.41 -0.5
1,205,051 + 16795 mRNA_8427 0.46 -1.1
1,205,164 + 16795 mRNA_8427 0.50 -0.2
1,205,167 - 16795 mRNA_8427 0.50 -0.6
1,205,195 - 16795 mRNA_8427 0.51 -0.6
1,205,205 - 16795 mRNA_8427 0.51 +2.2
1,205,208 + 16795 mRNA_8427 0.51 -0.2
1,205,218 - 16795 mRNA_8427 0.52 -0.1
1,205,225 + 16795 mRNA_8427 0.52 -1.1
1,205,228 + 16795 mRNA_8427 0.52 +0.6
1,205,263 + 16795 mRNA_8427 0.53 +1.1
1,205,323 + 16795 mRNA_8427 0.55 -0.7
1,205,367 - 16795 mRNA_8427 0.57 +1.1
1,206,074 - 16795 mRNA_8427 0.82 +1.2
1,206,136 - 16795 mRNA_8427 0.85 -0.6
1,206,336 - -0.4
1,206,341 - -0.6
1,206,349 - -1.9
1,206,364 + -1.5
1,206,379 - -0.8
1,206,385 - +1.1
1,206,401 + +2.2
1,206,483 + +1.3
1,206,674 + -0.6
1,206,678 - 16796 mRNA_8428 0.10 -1.0
1,206,685 + 16796 mRNA_8428 0.11 -0.4
1,207,406 - +1.3
1,207,507 + -0.0
1,207,536 + -0.6

Or see this region's nucleotide sequence